View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16460_low_3 (Length: 561)
Name: NF16460_low_3
Description: NF16460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16460_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 406
Target Start/End: Original strand, 2331691 - 2332085
Alignment:
| Q |
10 |
ataatactaagaaacaacaatgatcaccaccaataatggtgaaaaacagttaaaagggaaaaccaacacaagaaaggagaatacttaggtatcgttccct |
109 |
Q |
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| T |
2331691 |
ataatactaagaaacaacaatgatcaccaccaat---ggtgaaaaacagttaaaagggaaaaccaacacaagaaaggagaatacttaggtatcgttccct |
2331787 |
T |
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| Q |
110 |
gcacactattcgctcagttcttcacatgaatgtacctaaacattgtcgtttaaaaatgatttggattaatggcggttgggcagttttaataatttatttt |
209 |
Q |
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| T |
2331788 |
acacactattcgctcagtttttcacatgaatgcacctaaacattgtcgtttaaaaatgatttggattaatggcggttgggcagttttaataatttatttt |
2331887 |
T |
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| Q |
210 |
gtaactaaagttatgaaccggatgaacactagctattcgaagaactgcacataagtatttttgcaagagaaaacctctaccaaacaacctaaagagaagg |
309 |
Q |
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| T |
2331888 |
gtaactaaagttatgaaccggatgaacactagctattcgaagaactgcacataagtatttttgcaagagaaaacctctaccaaacaacctaaagagaagg |
2331987 |
T |
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| Q |
310 |
taaaactagtaatacaatatat-gnnnnnnnttcaaatagaaacgattgtggggagacaaggatcaaaacgttttatatgtgcaaaagccataagcaa |
406 |
Q |
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| T |
2331988 |
taaaactagtaatacaatatatataaaaaaattcaaatagaaacgattgtggggagacaaggatcaaaacgttttatatgtgcaaaagccataagcaa |
2332085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 489 - 542
Target Start/End: Original strand, 2332167 - 2332220
Alignment:
| Q |
489 |
ttatatacgcaggccatcatcagaagacgacgaaataaaatttctggtttgaat |
542 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2332167 |
ttatacacgcaggccatcatcagaagacggcgaaataaaatttctggtttgaat |
2332220 |
T |
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