View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16461_high_15 (Length: 291)

Name: NF16461_high_15

Description: NF16461

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF16461_high_15

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 161; E-Value: 7e-86

Query Start/End: Original strand, 21 - 270

Target Start/End: Complemental strand, 26644446 - 26644197

Alignment:

Q	21	gatgagtccacagagtttttactagccaaacagaagagaatatggtcggagtctagataccgtatgaaactaataatcaatcaaaaaagtgcaagtgaat	120	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	26644446	gatgagtccacagagtttttactagccaaagagaggagaatatggtcggagtctagataccgtatgaaactaataatcaatca-aaaagtgcaagtgaat	26644348	T

Q	121	atgaattacaaaccttggaggttgaaatctgcactggactagtggcttcaactgctnnnnnnnnnnnnnnnnnngatattag-tttaaatgcaactcata	219	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	26644347	atgaattacaaaccttggaggttgaaatctgcactggactagtggcttcaactgataaaaaaacaaacaaaaaatatattagttttaaatgcaactcata	26644248	T

Q	220	tttgcaatttttgtccacaaacgataaaatcacagattttgttttcattaa	270	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	26644247	tttgcaatttttgtccacaaacgataaaatcacagattttgttatcattaa	26644197	T

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Target: chr3; HSP #2

Raw Score: 45; E-Value: 1e-16

Query Start/End: Original strand, 83 - 155

Target Start/End: Complemental strand, 26658186 - 26658114

Alignment:

Q	83	tatgaaactaataatcaatcaaaaaagtgcaagtgaatatgaattacaaaccttggaggttgaaatctgcact	155	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	26658186	tatgaaattaataaccaatcaacaaagtacaagtgcagatgaattacaaaccttggaggctgaaatctgcact	26658114	T

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