View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16461_high_2 (Length: 836)

Name: NF16461_high_2
Description: NF16461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16461_high_2
NF16461_high_2
[»] chr7 (5 HSPs)
chr7 (5-820)||(6378227-6379039)
chr7 (5-786)||(6369762-6370540)
chr7 (509-671)||(6383983-6384139)
chr7 (609-671)||(8924138-8924200)
chr7 (495-572)||(23736822-23736899)
[»] scaffold0929 (1 HSPs)
scaffold0929 (132-671)||(845-1391)
[»] chr4 (1 HSPs)
chr4 (609-669)||(9854987-9855047)
[»] chr5 (1 HSPs)
chr5 (481-572)||(33863267-33863358)
[»] chr3 (1 HSPs)
chr3 (327-417)||(33148498-33148587)
[»] chr2 (2 HSPs)
chr2 (589-664)||(38006531-38006607)
chr2 (604-671)||(32073038-32073105)
[»] chr6 (1 HSPs)
chr6 (491-550)||(10571881-10571940)


Alignment Details
Target: chr7 (Bit Score: 696; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 5 - 820
Target Start/End: Original strand, 6378227 - 6379039
Alignment:
Q  5 acatattaatggatggattcttgcggggagaaatacttggttagacacaactctagataaaaaatatcaatctatacgtaaatgaaaaggagttaaaaga 104  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6378227 acatattaatggatggattcttgcggggagaaatacttagttagacacaactctagataaaaaatatcaatctatacgtaaatgaaaaggagttaaaaga 6378326  T
Q  105 taaataatttaatcacaccacttatcgtttcttttaatttctatcatttatatgtatgtgtcaaaataaattttatttgagattgtgttcaaacaagagt 204  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6378327 taaataatttagtcacaccacttatcgtttcttttaatttctatcatttatatgtatgtgtcaaaataaattttatttgagattgtgttcaaacaagagt 6378426  T
Q  205 tcttctattgcacaagttcaattgaaatgtgtggcatagcataataattgactagtttatgttttaggtctatagcccaaaagatcaaaccattgaattc 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||    
T  6378427 tcttctattgcacaagttcaattgaaatgtgtggcatagcataataattgactagtttatgttttaggtctatagcacaaaagatcaaaccactgcattc 6378526  T
Q  305 atattatcaacctcttatgtgtgtgatgactctgcatcatgtgatatttttagtatgttatcgagcctttttcttgtcatttgaggactttctaaatgtt 404  Q
    | ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6378527 aaattatcaacctcttatgtgtgtgatgactctccatcatgtgatattttcagtatgttatcgagcctttttcttgtcatttgaggactttctaaatgtt 6378626  T
Q  405 ttagaatgagttattactcgtggtttaagaaataatttgttttgaatcgttgtaattctctttctttcctaaccctactctatagatgttttgagtcttt 504  Q
    ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6378627 ttagagtgagttattactcgtggtttaagaaatgatttgtttttaatcgttgtaattctctttctttcctaaccctactctatagatgttttgagtcttt 6378726  T
Q  505 tttagtataaatcatgaaagtaagtcaaccaagacatctcttgaaagttatgggagctagaagatcaatacaatgaaacatatgaagactaaataatttg 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6378727 tttagtataaatcatgaaagtaagtcaaccaagacatctcttgaaagttatgggagctagaagatcaatacaatgaaacatatgaagactaaataatttg 6378826  T
Q  605 ggggaattttgtcctaagtcccaagctcatatcaaggatgaaataaacatgaagaatgaagaaaac-atggnnnnnnnncctcaagtccatgcatctatc 703  Q
    |||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| | ||        |||||||| |||||    |||    
T  6378827 ggggaattttgtcccaaatccaaagctcatatcaaggatgaaataaacatgaagaatgaagaaaacaagggaaaaaaaacctcaagttcatgc----atc 6378922  T
Q  704 tcatacacagacccaatgcacctcgcgcatgttgaagcttgcagagcgcgatttgctttctgctcatgcaccccaccacgttgttaaggaaaaatctttt 803  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6378923 tcatacacaaacccaatgcacctcgcgcatgttgaagcttgcagagcgcgatttgctttctgctcatgcaccccaccacgttgttaaggaaaaatcttat 6379022  T
Q  804 gctgttcttattccatg 820  Q
    |||||||||||||||||    
T  6379023 gctgttcttattccatg 6379039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 5 - 786
Target Start/End: Original strand, 6369762 - 6370540
Alignment:
Q  5 acatattaatggatggattcttgcggggagaaatacttggttagacacaactctagataaaaaatatcaatctatacgtaaatgaaaaggagttaaaaga 104  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6369762 acatattaatggatggattcttgcggggagaaatacttagttagacacaactctagataaaaaatatcaatctatacgtaaatgaaaaggagttaaaaga 6369861  T
Q  105 taaataatttaatcacaccacttatcgtttcttttaatttctatcatttatatgtatgtgtcaaaataaattttatttgagattgtgttcaaacaagagt 204  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6369862 taaataatttagtcacaccacttatcgtttcttttaatttctatcatttatatgtatgtgtcaaaataaattttatttgagattgtgttcaaacaagagt 6369961  T
Q  205 tcttctattgcacaagttcaattgaaatgtgtggcatagcataataattgactagtttatgttttaggtctatagcccaaaagatcaaaccattgaattc 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||    
T  6369962 tcttctattgcacaagttcaattgaaatgtgtggcatagcataataattgactagtttatgttttaggtctatagcacaaaagatcaaaccactgcattc 6370061  T
Q  305 atattatcaacctcttatgtgtgtgatgactctgcatcatgtgatatttttagtatgttatcgagcctttttcttgtcatttgaggactttctaaatgtt 404  Q
    | ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6370062 aaattatcaacctcttatgtgtgtgatgactctccatcatgtgatattttcagtatgttatcgagcctttttcttgtcatttgaggactttctaaatgtt 6370161  T
Q  405 ttagaatgagttattactcgtggtttaagaaataatttgttttgaatcgttgtaattctctttctttcctaaccctactctatagatgttttgagtcttt 504  Q
    ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6370162 ttagagtgagttattactcgtggtttaagaaatgatttgtttttaatcgttgtaattctctttctttcctaaccctactctatagatgttttgagtcttt 6370261  T
Q  505 tttagtataaatcatgaaagtaagtcaaccaagacatctcttgaaagttatgggagctagaagatcaatacaatgaaacatatgaagactaaataatttg 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6370262 tttagtataaatcatgaaagtaagtcaaccaagacatctcttgaaagttatgggagctagaagatcaatacaatgaaacatatgaagactaaataatttg 6370361  T
Q  605 ggggaattttgtcctaagtcccaagctcatatcaaggatgaaataaacatgaagaatgaagaaaac-atggnnnnnnnncctcaagtccatgcatctatc 703  Q
    |||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| | ||        |||||||| |||||    |||    
T  6370362 ggggaattttgtcccaaatccaaagctcatatcaaggatgaaataaacatgaagaatgaagaaaacaagggaaaaaaaacctcaagttcatgc----atc 6370457  T
Q  704 tcatacacagacccaatgcacctcgcgcatgttgaagcttgcagagcgcgatttgctttctgctcatgcaccccaccacgttg 786  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6370458 tcatacacaaacccaatgcacctcgcgcatgttgaagcttgcagagcgcgatttgctttctgctcatgcaccccaccacgttg 6370540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 671
Target Start/End: Original strand, 6383983 - 6384139
Alignment:
Q  509 gtataaatcatgaaagtaagtcaaccaagacatctcttgaaagttatgggagctagaagatcaa-tacaatgaaacatatgaagactaaataatttgggg 607  Q
    |||||||| ||  |||||||||||||||| |||||  || ||||||||| || || |||| ||| ||||| ||| ||||| ||||| |||||| |||| |    
T  6383983 gtataaatgattgaagtaagtcaaccaagtcatcttatggaagttatggaagttaaaagaccaagtacaacgaagcatataaagaccaaataacttggag 6384082  T
Q  608 gaattttgtcctaagtcccaagctcatatcaaggatgaaataaacatgaagaatgaagaaaaca 671  Q
     ||||||       |||||||| ||||||||| ||||||| | ||||||| |||||||| ||||    
T  6384083 aaatttt-------gtcccaagttcatatcaatgatgaaaaatacatgaaaaatgaagagaaca 6384139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 609 - 671
Target Start/End: Complemental strand, 8924200 - 8924138
Alignment:
Q  609 aattttgtcctaagtcccaagctcatatcaaggatgaaataaacatgaagaatgaagaaaaca 671  Q
    |||||||||  ||||||||| ||||||||||||||| ||   ||| |||||||||||||||||    
T  8924200 aattttgtcacaagtcccaaactcatatcaaggatggaaatcacacgaagaatgaagaaaaca 8924138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 572
Target Start/End: Original strand, 23736822 - 23736899
Alignment:
Q  495 ttgagtcttttttagtataaatcatgaaagtaagtcaaccaagacatctcttgaaagttatgggagctagaagatcaa 572  Q
    ||||||||||||  |||| ||||||| || |||||||||||  ||||||| | |||||||||| ||| |||| |||||    
T  23736822 ttgagtctttttgtgtatgaatcatggaactaagtcaaccagtacatctcattaaagttatggaagcaagaatatcaa 23736899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0929 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold0929
Description:

Target: scaffold0929; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 132 - 671
Target Start/End: Original strand, 845 - 1391
Alignment:
Q  132 tttcttttaatttctatcatttatatgtatgtgtcaaaataaattttatttgagattgtgttcaaacaagagttcttctattgcacaagttcaattgaaa 231  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||  | ||||||| |||||||||||  |||||| ||||||| |||||| ||    
T  845 tttcttttaatttctattatttatgtgtatgtgtcaaaataaattttatttagggttgtgtttaaacaagagtttctctattccacaagtccaattgtaa 944  T
Q  232 tgtgtggcatagcataataattgactagtttatgttttaggtctatagcccaaaagatcaaaccattgaattcatattatcaacctctt--------atg 323  Q
    ||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| ||| |        |||    
T  945 tgtgtggcataacataataattgactagtttatgttgtaggtttatagcccaaaagatcaaaccattgaattcaaattatcaaactcattataacctatg 1044  T
Q  324 tgtgtgatgactctgcatcatgtgatattttt-agtatgttatcgagcctttttcttgtcatttgaggactttctaaatgttttagaatgagttattact 422  Q
    |||||||||| ||  ||| |||| || ||||| ||||||||||||   || |||||| ||||||||||||||| ||||||||||||| |||   ||||||    
T  1045 tgtgtgatgaatcctcattatgtaatgttttttagtatgttatcgcatctctttcttatcatttgaggactttttaaatgttttagagtga---attact 1141  T
Q  423 cgtggtttaagaaataatttgttttgaatcgttgtaattctctttctttcctaaccctactctatagatgttttgagtcttttttagtataaatcatgaa 522  Q
    |||||||||| ||||| |||||||||| |  ||||||||||||||||| |||||||  |   |||||  ||||| | |||||||| ||||||||||||||    
T  1142 cgtggtttaaaaaatattttgttttgagttattgtaattctctttcttccctaaccaaaaattataggcgttttaaatcttttttggtataaatcatgaa 1241  T
Q  523 agtaagtcaaccaagacatctcttgaaagttatgggagctagaagatcaatacaatgaaacatatgaagactaaataatttgggggaattttgt-cctaa 621  Q
    |||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| |||||    
T  1242 agtaagtcaaccaagatatctcttgaaagttatggaagccagaagatcaatacaatgaaacatatgaagaccaaataacttgggggaactttgtccctaa 1341  T
Q  622 gtcccaagctcatatcaaggatgaaataaacatgaagaatgaagaaaaca 671  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1342 gtcccaagctcatatcaaggatgaaataaacaagaagaatgaagaaaaca 1391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 609 - 669
Target Start/End: Complemental strand, 9855047 - 9854987
Alignment:
Q  609 aattttgtcctaagtcccaagctcatatcaaggatgaaataaacatgaagaatgaagaaaa 669  Q
    |||||||||  ||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  9855047 aattttgtctaaagtcccaaactcatatcaaggatgaaaaaaacatgaagaatgaagaaaa 9854987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 572
Target Start/End: Complemental strand, 33863358 - 33863267
Alignment:
Q  481 actctatagatgttttgagtcttttttagtataaatcatgaaagtaagtcaaccaagacatctcttgaaagttatgggagctagaagatcaa 572  Q
    |||| |||||||||||||||||||||| ||||| ||||||||  |||| ||||| ||||||||| ||||||| |||| ||| || |||||||    
T  33863358 actccatagatgttttgagtcttttttggtatagatcatgaagttaagccaacctagacatctcgtgaaagtaatggaagcaaggagatcaa 33863267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 327 - 417
Target Start/End: Original strand, 33148498 - 33148587
Alignment:
Q  327 gtgatgactctgcatcatgtgatattttta-gtatgttatcgagcctttttcttgtcatttgaggactttctaaatgttttagaatgagtta 417  Q
    |||||||| || |||||||| |||||| || |||||||||||||| |||  |||||||||||| || |||||| | |||||||| |||||||    
T  33148498 gtgatgacacttcatcatgtaatatttatatgtatgttatcgagcattt--cttgtcatttgaagattttctagaggttttagagtgagtta 33148587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 589 - 664
Target Start/End: Original strand, 38006531 - 38006607
Alignment:
Q  589 aagactaaataatttgggggaattttgtcctaagtcccaagctcatatcaaggatgaaataa-acatgaagaatgaa 664  Q
    ||||| ||| |||| ||||||||||||||  ||||||||| |||||||||||||| ||| ||  |||||||||||||    
T  38006531 aagacaaaacaattcgggggaattttgtctcaagtcccaatctcatatcaaggattaaaaaacgcatgaagaatgaa 38006607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 671
Target Start/End: Original strand, 32073038 - 32073105
Alignment:
Q  604 gggggaattttgtcctaagtcccaagctcatatcaaggatgaaataaacatgaagaatgaagaaaaca 671  Q
    ||||||||||| ||| |||||| |||||||||| ||| ||| ||   |||||||||||||||||||||    
T  32073038 gggggaattttttcccaagtcctaagctcatattaagaatggaaagtacatgaagaatgaagaaaaca 32073105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 550
Target Start/End: Original strand, 10571881 - 10571940
Alignment:
Q  491 tgttttgagtcttttttagtataaatcatgaaagtaagtcaaccaagacatctcttgaaa 550  Q
    ||||||||||| ||||  ||||||||||||||| || | ||||||||||||||| |||||    
T  10571881 tgttttgagtccttttaggtataaatcatgaaattaggccaaccaagacatctcatgaaa 10571940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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