View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16461_high_32 (Length: 223)
Name: NF16461_high_32
Description: NF16461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16461_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 37810125 - 37810309
Alignment:
| Q |
15 |
caaaggagcaccaacagctattgtatttcttattttgttnnnnnnnnnnnnctccaataaaagcaattgcataactgttaactcaccaaaagactggata |
114 |
Q |
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| T |
37810125 |
caaaggagcaccaacagctatggtatttcttattttgttcaaaaaaa----ctccactaaaagcaattgcataactgttaactcaccaaaagactggata |
37810220 |
T |
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| Q |
115 |
ggcatccaaataatgttgaccaaaaacattagaggacaattcaaacagcatcatcatctgtatagttgacagcttggtcccaataatga |
203 |
Q |
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| T |
37810221 |
ggcatccaaataatgttgaccaaaaacattagaggacaattcaaacagcatcatcatctgtatagttgacagcttggtaccaataatga |
37810309 |
T |
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Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 66 - 204
Target Start/End: Original strand, 52352032 - 52352170
Alignment:
| Q |
66 |
ctccaataaaagcaattgcataactgttaactcaccaaaagactggataggcatccaaataatgttgaccaaaaacattagaggacaattcaaacagcat |
165 |
Q |
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| T |
52352032 |
ctccactagaagcaattgcataactgttaactcaccaaaagactggataggcatcctaattatgttaaccaaaaacactagaagacaattcaaacagcat |
52352131 |
T |
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| Q |
166 |
catcatctgtatagttgacagcttggtcccaataatgag |
204 |
Q |
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| T |
52352132 |
cgtcctccgtatagttgacagcttggtcccaataatgag |
52352170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 17198600 - 17198673
Alignment:
| Q |
66 |
ctccaataaaagcaattgcataactgttaactcaccaaaagactggataggcatccaaataatgttgaccaaaa |
139 |
Q |
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| T |
17198600 |
ctccactagaagcaattgcatatctgttaactcaccaaaagactggataggcatcctaataatgttgaccaaaa |
17198673 |
T |
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