View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16461_high_6 (Length: 443)
Name: NF16461_high_6
Description: NF16461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16461_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 10 - 428
Target Start/End: Original strand, 24906779 - 24907197
Alignment:
| Q |
10 |
agatgaagctatcaacatcctttacaatcttcaattatcagaacaaggtttgaaaactctcttaaacttcaaaaatggagaatttttagactctctaatg |
109 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24906779 |
agatgaagctataaacatcctttacaatcttcaattatcagaacaaggtttgaaaactctcttaaacttcaaaaatggagaatttttagactctttaatg |
24906878 |
T |
|
| Q |
110 |
agattattacaaaaaggtaactacgattcaagaacatacgcagtttttctgttgaaatctatgtcaaaagtagctgatccatcaaagctagccaatctaa |
209 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||| | || |||||||||| |||||||| |||||||||||||| ||||| ||||||| |
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| T |
24906879 |
agattattacaaaagggtaactacgattcaagaacatacgcagtttgtttgctgaaatctatatcaaaagttgctgatccatcaaaactagcgaatctaa |
24906978 |
T |
|
| Q |
210 |
agaccgagtttttcgtcgagttagttcaacttctcaaagaccagatatcaaagaaagcatcaaaagcaacactacaaacgttaattcaacttgtcgaatt |
309 |
Q |
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| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24906979 |
aaaccgagtatttcgtcgagttagttcaacttctcaaagaccagatatcaaagaaagcatcaaaagcaacactacaaacgttaattcaacttgtcgaatt |
24907078 |
T |
|
| Q |
310 |
cggaagaaatagagtaaaagcaattgaatcaggttgtgtttatgctttgatagaaattcttcttgattgcaaagagaggaagccatgtgagatgattttg |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
24907079 |
cggaagaaatagagtaaaagcaattgaatcaggttgtgtttatgctttgatagaacttcttcttgattgcaaagaaagaaagccatgtgagatgattttg |
24907178 |
T |
|
| Q |
410 |
gtgcttttggagatgttat |
428 |
Q |
| |
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||||||||||||||||||| |
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| T |
24907179 |
gtgcttttggagatgttat |
24907197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 10 - 428
Target Start/End: Complemental strand, 24890647 - 24890229
Alignment:
| Q |
10 |
agatgaagctatcaacatcctttacaatcttcaattatcagaacaaggtttgaaaactctcttaaacttcaaaaatggagaatttttagactctctaatg |
109 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
24890647 |
agatgaagctataaacatcctttacaatcttcaattatcagaacaaggtttgaaaactctcttaaacttcaaaaatggagaatttatagactctttaata |
24890548 |
T |
|
| Q |
110 |
agattattacaaaaaggtaactacgattcaagaacatacgcagtttttctgttgaaatctatgtcaaaagtagctgatccatcaaagctagccaatctaa |
209 |
Q |
| |
|
| |||||||||||| ||||||||||| ||||||||||||||||||| | || |||||||||| ||||||||||||||||||||||| ||||| ||||||| |
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| T |
24890547 |
aaattattacaaaagggtaactacgaatcaagaacatacgcagtttatatgatgaaatctatatcaaaagtagctgatccatcaaaactagcaaatctaa |
24890448 |
T |
|
| Q |
210 |
agaccgagtttttcgtcgagttagttcaacttctcaaagaccagatatcaaagaaagcatcaaaagcaacactacaaacgttaattcaacttgtcgaatt |
309 |
Q |
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| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24890447 |
aaaccgagtatttcgtcgagttagttcaacttctcaaagaccagatatcaaagaaagcatcaaaagcaacactacaaacgttaattcaacttgtcgaatt |
24890348 |
T |
|
| Q |
310 |
cggaagaaatagagtaaaagcaattgaatcaggttgtgtttatgctttgatagaaattcttcttgattgcaaagagaggaagccatgtgagatgattttg |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||| |
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|
| T |
24890347 |
cggaagaaatagagtaaaagcaattgaatcaggttgtgtttatgctttgatagaacttcttcttgattgcaaagaaagaaagccatgtgagatgattttg |
24890248 |
T |
|
| Q |
410 |
gtgcttttggagatgttat |
428 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
24890247 |
gtgcttttggagatgttat |
24890229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 428
Target Start/End: Original strand, 24899320 - 24899738
Alignment:
| Q |
10 |
agatgaagctatcaacatcctttacaatcttcaattatcagaacaaggtttgaaaactctcttaaacttcaaaaatggagaatttttagactctctaatg |
109 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
24899320 |
agatgaagctataaacatcctttacaatcttcaattatcagaacaaggtttgaaaactctcttaaacttcaaaaatggagaatttttagactctttaatt |
24899419 |
T |
|
| Q |
110 |
agattattacaaaaaggtaactacgattcaagaacatacgcagtttttctgttgaaatctatgtcaaaagtagctgatccatcaaagctagccaatctaa |
209 |
Q |
| |
|
||| || || || ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||| ||||| ||||||| |
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|
| T |
24899420 |
ttattttttcataagggtaactacgattcaagaacatacgcagtttttttgttgaaatctatttcaaaagttgctgatccatcaaatctagctaatctaa |
24899519 |
T |
|
| Q |
210 |
agaccgagtttttcgtcgagttagttcaacttctcaaagaccagatatcaaagaaagcatcaaaagcaacactacaaacgttaattcaacttgtcgaatt |
309 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24899520 |
ataccgagtttttcgtcgagttagttcaacttctcaaagaccagatatcaaagaaagcatcaaaagcaacactacaaacgttaattcaacttgtcgaatt |
24899619 |
T |
|
| Q |
310 |
cggaagaaatagagtaaaagcaattgaatcaggttgtgtttatgctttgatagaaattcttcttgattgcaaagagaggaagccatgtgagatgattttg |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||| |
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|
| T |
24899620 |
cggaagaaatagagtaaaagcaattgaatcaggttgtgtttttgctttgatagaacttcttcttgattgcaaagaaagaaagccatgtgagatgattttg |
24899719 |
T |
|
| Q |
410 |
gtgcttttggagatgttat |
428 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
24899720 |
gtgcttttggagatgttat |
24899738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 11 - 428
Target Start/End: Original strand, 5284997 - 5285416
Alignment:
| Q |
11 |
gatgaagctatcaacatcctttacaatcttcaattatcagaacaaggtttgaaaactctcttaaacttcaaaaatggagaatttttagactctctaatga |
110 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| || |||| || ||||| | ||||| |||||| ||||||||||||||||| ||||| |
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|
| T |
5284997 |
gatgaagctatagacatcctttacaatcttcaattatcagaaaaatgttttaacactcttt--aacttaaaaaatagagaatttttagactcttcaatga |
5285094 |
T |
|
| Q |
111 |
gattattacaaaaaggtaactacgattcaagaacatacgcagtttttctgttgaaatctatgtcaaaagtagctgatccatcaaagctagccaatctaaa |
210 |
Q |
| |
|
|||| || || ||||||||| |||||||||||| | ||||||| ||||||||||||| |||||||| | | ||||||| || ||| ||| |||| |
|
|
| T |
5285095 |
gatttttctaagcgggtaactacaattcaagaacatgcacagtttta-tgttgaaatctatatcaaaagttgttaatccatcgaaactacagaatataaa |
5285193 |
T |
|
| Q |
211 |
gaccgagtttttcgtcgagttagttcaacttctcaaagaccagatatcaa-------agaaagcatcaaaagcaacactacaaacgttaattcaacttgt |
303 |
Q |
| |
|
|| ||||||||||| | |||||||||||||| || || ||||| | || | ||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
5285194 |
aac--agtttttcgtcaaattagttcaacttcttaaggatcagatttaaacaaaaaaaaaaaaaatcaaaagcaacactacaaaagttaattcaacttgt |
5285291 |
T |
|
| Q |
304 |
cgaattcggaagaaatagagtaaaagcaattgaatcaggttgtgtttatgctttgatagaaattcttcttgattgcaaagagaggaagccatgtgagatg |
403 |
Q |
| |
|
|| ||||| ||||| ||||||| |||| | ||||||| |||||||| || ||| | ||| |||||||| |||| |||| || |||||||| |||||| |
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|
| T |
5285292 |
ggagttcgggagaaaaagagtaagagcagtggaatcagattgtgtttctgttttaaccgaacttcttcttcattggaaaggaagaaagccatgcgagatg |
5285391 |
T |
|
| Q |
404 |
attttggtgcttttggagatgttat |
428 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
5285392 |
attttggtgcttttggagatgttat |
5285416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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