View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16461_high_9 (Length: 387)
Name: NF16461_high_9
Description: NF16461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16461_high_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 49123990 - 49123604
Alignment:
| Q |
1 |
acgtaggtagtaatttaatatggtacacacacctacacgacaagtttcatgagctgccgaattagaaaattaacaatacagacaccaagaggtagttaga |
100 |
Q |
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| T |
49123990 |
acgtaggtagtaatttaatatggtacacacacctacacgacaagtttcatgagctgccgaattagaaaattaacaatacagacaccaagaggtagttaga |
49123891 |
T |
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| Q |
101 |
aatgatgcacaaaactcaaagattttctttgcgtgattgcatgcatatatcaagcatcaaatagaagtccccccttccaggcgtatcctcttgggacccg |
200 |
Q |
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| T |
49123890 |
aatgatgcacaaaactcaaagattttctttgcgtgattgcatgcatatatcaagcatcaaatagaagtccccccttccaggcgtatcctcttgggacccg |
49123791 |
T |
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| Q |
201 |
tctcttcaacttggttgcaagccgttccgcccctgttttccttggcctctactaaacatcttttgtaaggtttgaaccctgttcgacgagtcttaagttt |
300 |
Q |
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| T |
49123790 |
tctcttcaacttggttgcaagccgttccgcccctgttttccttggcctctactaaacatcttttgtaaggtttgaaccctgttcgacgagtcttaagttt |
49123691 |
T |
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| Q |
301 |
accttgtccaagacccatggttagaaatccctcctcattgttattttgtacaaatggtaggttttgctgtgcctggtcacaattaca |
387 |
Q |
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| T |
49123690 |
accttgtccaagacccatggttagaaatccctcctcattgttattttgtacaaatggtaggttttgctgtgcctggtcacaattaca |
49123604 |
T |
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