View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16461_low_11 (Length: 384)

Name: NF16461_low_11
Description: NF16461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16461_low_11
NF16461_low_11
[»] chr1 (8 HSPs)
chr1 (20-383)||(51807677-51808034)
chr1 (189-377)||(51803887-51804075)
chr1 (218-337)||(51772294-51772413)
chr1 (20-94)||(51772096-51772170)
chr1 (218-337)||(51780160-51780279)
chr1 (22-82)||(51803793-51803853)
chr1 (20-81)||(51779981-51780046)
chr1 (216-319)||(51761302-51761406)
[»] scaffold0710 (2 HSPs)
scaffold0710 (218-337)||(6802-6921)
scaffold0710 (20-81)||(6623-6688)


Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 383
Target Start/End: Original strand, 51807677 - 51808034
Alignment:
Q  20 ctaggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagacttagatgtgtttcctagatatatggtataatatacgaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51807677 ctaggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagacttagatgtgtttcctagatatatggtataatatacgaaa 51807776  T
Q  120 accattttccatttctgtgtagtatctatatcagcttaactcctcttgcagttgctagttgagttgcgcgtatctaattctatttgcataactctgaaaa 219  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||      |||||||||||||| ||||||||||||||||||||||||||||||    
T  51807777 accattttccatttctgtgtagtatctatatcagctttactcctcttgc------tagttgagttgcgcatatctaattctatttgcataactctgaaaa 51807870  T
Q  220 atttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgttta 319  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51807871 atttcagtgagagttggagcaaacatatctaaaacaataaagagaactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgttta 51807970  T
Q  320 cgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcgcagtattatctacccac 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||    
T  51807971 cgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcacagtgttatctatccac 51808034  T

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Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 189 - 377
Target Start/End: Original strand, 51803887 - 51804075
Alignment:
Q  189 gtatctaattctatttgcataactctgaaaaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaatt 288  Q
    |||||||||||| |||  |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  51803887 gtatctaattctctttatataactctgaaaaatttcagtgagatcgggagcaaacatatctaaaacaataaagaggacgttgaacttaggggctcaaatt 51803986  T
Q  289 cttcaaatgggtggagtggagaaagtgtttacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcgcagtattatct 377  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  51803987 cttcaaatgggtggagtggagaaaatgtttaggcagtattttagtgtgagagaaggagagaggctatcaaaagtttcgcagtgttatct 51804075  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 218 - 337
Target Start/End: Original strand, 51772294 - 51772413
Alignment:
Q  218 aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt 317  Q
    |||||||||| ||| || |||||||||| ||| ||||||| ||||| |  ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51772294 aaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattcttcaagtgggtggagtggagaaagtgtt 51772393  T
Q  318 tacgcaatattttagtgtga 337  Q
    || ||  |||||||||||||    
T  51772394 tatgcggtattttagtgtga 51772413  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 51772096 - 51772170
Alignment:
Q  20 ctaggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagacttagatgtgtttcc 94  Q
    |||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  51772096 ctagaaaggctgatagtctctcacaaaaagtccaagaacatggtgagtacccttgtaagactgagatgtgtttcc 51772170  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 218 - 337
Target Start/End: Original strand, 51780160 - 51780279
Alignment:
Q  218 aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt 317  Q
    |||||||| | ||| | ||||||||||| ||| ||||||||| |||||  ||||||||||||||| |||||||| || ||||||||||||| ||| | ||    
T  51780160 aaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattctttaagtgggtggagtggataaattttt 51780259  T
Q  318 tacgcaatattttagtgtga 337  Q
    || ||| |||||||||||||    
T  51780260 tatgcactattttagtgtga 51780279  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 51803793 - 51803853
Alignment:
Q  22 aggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagactt 82  Q
    |||||||| |||||||||||||||||||| |||||||| |||||||||||| |||||||||    
T  51803793 aggaaggccgatagtctctcacaaagagttcaagaacatggtgagtaccctagtaagactt 51803853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 51779981 - 51780046
Alignment:
Q  20 ctaggaaggctgatagtctctcacaaagagtccaagaacacg----gtgagtacccttgtaagact 81  Q
    ||||||||||||||||||||||||||| |||||||||||| |    ||||||||||||||||||||    
T  51779981 ctaggaaggctgatagtctctcacaaaaagtccaagaacatggtgagtgagtacccttgtaagact 51780046  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 216 - 319
Target Start/End: Original strand, 51761302 - 51761406
Alignment:
Q  216 aaaaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagctta-ggggctcaaattcttcaaatgggtggagtggagaaagt 314  Q
    |||||||||||||||||| |||| |||||||||  |||||||||||||||  || ||   | ||||||| ||||||| || |||||| |||||||||| |    
T  51761302 aaaaatttcagtgagagtgggagaaaacatatcagaaacaataaagaggaagttaagtacagggggctcgaattcttgaagtgggtgaagtggagaaaat 51761401  T
Q  315 gttta 319  Q
    |||||    
T  51761402 gttta 51761406  T

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Target: scaffold0710 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0710
Description:

Target: scaffold0710; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 218 - 337
Target Start/End: Original strand, 6802 - 6921
Alignment:
Q  218 aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt 317  Q
    |||||||| | ||| | ||||||||||| ||| ||||||||| |||||  ||||||||||||||| |||||||| || ||||||||||||| ||| | ||    
T  6802 aaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattctttaagtgggtggagtggataaattttt 6901  T
Q  318 tacgcaatattttagtgtga 337  Q
    || ||| |||||||||||||    
T  6902 tatgcactattttagtgtga 6921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0710; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 6623 - 6688
Alignment:
Q  20 ctaggaaggctgatagtctctcacaaagagtccaagaacacg----gtgagtacccttgtaagact 81  Q
    ||||||||||||||||||||||||||| |||||||||||| |    ||||||||||||||||||||    
T  6623 ctaggaaggctgatagtctctcacaaaaagtccaagaacatggtgagtgagtacccttgtaagact 6688  T

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