View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16461_low_13 (Length: 315)
Name: NF16461_low_13
Description: NF16461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16461_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 32627083 - 32626790
Alignment:
| Q |
16 |
attatccatctccatctgaagtgaaattggaagttattactgaaggatcatttgtcatgaatcaactcgagatatctgaagtgaattggaatgctcgtga |
115 |
Q |
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| T |
32627083 |
attatccatctccatctgaagtgaaattggaagttattactgaaggatcatttgtcatgaatcaactcgagatatctgaagtgaattggaatgctcgtga |
32626984 |
T |
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| Q |
116 |
tgattttgaatctgaatcattcggagatgatggatactatgtggcacaatgcatgagagctttggctgaacctttgctagttagtcattttggtgaaggt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32626983 |
tgattttgaatctgaatcattcggagatgatggatacaatgtggcacaatgcatgagagctttggctgaacctttgctagtcagtcattttggtgaaggt |
32626884 |
T |
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| Q |
216 |
gttgttaaagagatttttaaccgctataaaaaatatttaaccgatcg-aactctaaagagagaactaggttcatcaatatcaccatattcttgg |
308 |
Q |
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| T |
32626883 |
gttgttaaagagatttttaaccgctataaaaaatatttaaccgatcgaaactctaaagggagaactaagttcatcaatatcaccatattattgg |
32626790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 32702737 - 32702662
Alignment:
| Q |
145 |
atggatactatgtggcacaatgcatgagagctttggctgaacctttgcta---gttagtcattttggtgaaggtgt |
217 |
Q |
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| T |
32702737 |
atggatacgatgtggcacaatgcataagggctgtggctgaacctttgttgttggttagtcattttggtgaaggtgt |
32702662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 7292180 - 7292132
Alignment:
| Q |
165 |
tgcatgagagctttggctgaacctttgctagttagtcattttggtgaag |
213 |
Q |
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| T |
7292180 |
tgcattagagctgtggttgaacctttgctagttagtcactttggtgaag |
7292132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 32708758 - 32708710
Alignment:
| Q |
20 |
tccatctccatctgaagtgaaattggaagttattactgaaggatcattt |
68 |
Q |
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| T |
32708758 |
tccatctccatcggaagtgaaattggaagttctcaaagaaggatcattt |
32708710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 262
Target Start/End: Complemental strand, 27736112 - 27735842
Alignment:
| Q |
16 |
attatccatctccatctgaagtgaaattggaagttattactgaaggatcatttgtcatgaatcaactcgagatatctgaagtgaattggaatgctcgtga |
115 |
Q |
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||||||||||||||||||||||||| ||||||||| | | |||||||||||||||||| ||| || | ||| | |||||||| ||||||||||||| ||| |
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| T |
27736112 |
attatccatctccatctgaagtgaagttggaagttctcaatgaaggatcatttgtcatcaataaattggaggtttctgaagttaattggaatgctcttga |
27736013 |
T |
|
| Q |
116 |
tgatt---------------ttgaatctgaa---------tcattcggagatgatggatactatgtggcacaatgcatgagagctttggctgaacctttg |
191 |
Q |
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| T |
27736012 |
tgattgtaatgcctttgactttgaatctgaaatgtcagaatcactcagagatgatggatacaatatggcacaatgcattagggctgtggctgaacctttg |
27735913 |
T |
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| Q |
192 |
ctagttagtcattttggtgaaggtgttgttaaagagatttttaaccgctataaaaaatatttaaccgatcg |
262 |
Q |
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| T |
27735912 |
ctagttagtcactttggtgaaggtgtcattacagagatttttgaccgctatagaaaaattttaactgatcg |
27735842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 5810662 - 5810560
Alignment:
| Q |
142 |
atgatggatactatgtggcacaatgcatgagagctttggctgaacctttgctagttagtcattttggtgaaggtgttgttaaagagatttttaaccgcta |
241 |
Q |
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||||||||||| |||||||||||||||| || ||| |||||||||||||||||| |||||| |||||||||||||| |||||||||||||||| ||||| |
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| T |
5810662 |
atgatggatacaatgtggcacaatgcataagggctgtggctgaacctttgctagctagtcactttggtgaaggtgtcattaaagagatttttaatcgcta |
5810563 |
T |
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| Q |
242 |
taa |
244 |
Q |
| |
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||| |
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| T |
5810562 |
taa |
5810560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 20117932 - 20117989
Alignment:
| Q |
16 |
attatccatctccatctgaagtgaaattggaagttattactgaaggatcatttgtcat |
73 |
Q |
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|||||||||||||| |||||||||||||||||||| | |||||||| ||||||||||| |
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| T |
20117932 |
attatccatctccaactgaagtgaaattggaagttctaactgaagggtcatttgtcat |
20117989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 21941752 - 21941687
Alignment:
| Q |
182 |
tgaacctttgctagttagtcattttggtgaaggtgttgttaaagagatttttaaccgctataaaaa |
247 |
Q |
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|||||||||||| |||||||||||||||||||||| | ||||| | ||||||||||||||||| |
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| T |
21941752 |
tgaacctttgcttattagtcattttggtgaaggtgtgactgaagaggtatttaaccgctataaaaa |
21941687 |
T |
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