View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16461_low_14 (Length: 305)

Name: NF16461_low_14
Description: NF16461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16461_low_14
NF16461_low_14
[»] chr2 (1 HSPs)
chr2 (18-305)||(36695880-36696167)


Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 36695880 - 36696167
Alignment:
Q  18 atgcatgattaaaaccaagaaaaacaaggaacaaaacttgcctacagagaattcggagacaacaacaacagtcataacagcccacattgcagaagaacca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36695880 atgcatgattaaaaccaagaaaaacaaggaacaaaacttgcctacagagaattcggagacaacaacaacagtcataacagcccacattgcagaagaacca 36695979  T
Q  118 aaactatcatagagaggtttaagatagtaaaatgttgaaaccaatgtaatagcaaatgctactttcaaagaatgaatgacccttcttggatcttcttttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36695980 aaactatcatagagaggtttaagatagtaaaatgttgaaaccaatgtaatagcaaatgctactttcaaagaatgaatgacccttcttggatcttcttttc 36696079  T
Q  218 ccaattccttcagctgcaacatcacatttactactttaatagtaaactcattaggcaagttcatcaaacattgccaaaactttgtgat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36696080 ccaattccttcagctgcaacatcacatttactactttaatagtaaactcattaggcaagttcatcaaacattgccaaaactttgtgat 36696167  T

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