View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16461_low_16 (Length: 291)
Name: NF16461_low_16
Description: NF16461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16461_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 21 - 270
Target Start/End: Complemental strand, 26644446 - 26644197
Alignment:
| Q |
21 |
gatgagtccacagagtttttactagccaaacagaagagaatatggtcggagtctagataccgtatgaaactaataatcaatcaaaaaagtgcaagtgaat |
120 |
Q |
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| T |
26644446 |
gatgagtccacagagtttttactagccaaagagaggagaatatggtcggagtctagataccgtatgaaactaataatcaatca-aaaagtgcaagtgaat |
26644348 |
T |
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| Q |
121 |
atgaattacaaaccttggaggttgaaatctgcactggactagtggcttcaactgctnnnnnnnnnnnnnnnnnngatattag-tttaaatgcaactcata |
219 |
Q |
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| T |
26644347 |
atgaattacaaaccttggaggttgaaatctgcactggactagtggcttcaactgataaaaaaacaaacaaaaaatatattagttttaaatgcaactcata |
26644248 |
T |
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| Q |
220 |
tttgcaatttttgtccacaaacgataaaatcacagattttgttttcattaa |
270 |
Q |
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| T |
26644247 |
tttgcaatttttgtccacaaacgataaaatcacagattttgttatcattaa |
26644197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 26658186 - 26658114
Alignment:
| Q |
83 |
tatgaaactaataatcaatcaaaaaagtgcaagtgaatatgaattacaaaccttggaggttgaaatctgcact |
155 |
Q |
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||||||| |||||| ||||||| ||||| |||||| | ||||||||||||||||||||| ||||||||||||| |
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| T |
26658186 |
tatgaaattaataaccaatcaacaaagtacaagtgcagatgaattacaaaccttggaggctgaaatctgcact |
26658114 |
T |
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