View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16461_low_17 (Length: 278)
Name: NF16461_low_17
Description: NF16461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16461_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 26644211 - 26643945
Alignment:
| Q |
1 |
ttttgttttcattaattatatatttttggtccttaaagttgtttttaagttttactctagtctgatnnnnnnnncaaatacactttagtcctttnnnnnn |
100 |
Q |
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| T |
26644211 |
ttttgttatcattaaat-tatatttttggtccttaaagttgtttttaagttttactctagtctgataaaaaaa-caaatacactttagtcctttaaaaaa |
26644114 |
T |
|
| Q |
101 |
nnn-ttgtttcaattaaatcccttacatcacaaacattatacactttagtctcataatgtaaatacaggctaaaatttgaaactatgcttaaacaatgaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26644113 |
aaaattgtttcaattaaatcccttacatcacaaacattatacactttagtctcataatgtaaatacaggctaaaatttgaaactatgcttaaacaatgaa |
26644014 |
T |
|
| Q |
200 |
atagatcaccaaaaagaagccactgactagtgacagtaactgattttacctcaaattcggatgatgtcc |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26644013 |
atagatcaccaaaaagaagccactgactagtgacagtaactgattttacctcaaattcggatgctgtcc |
26643945 |
T |
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