View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16461_low_18 (Length: 273)
Name: NF16461_low_18
Description: NF16461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16461_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 1844736 - 1844991
Alignment:
| Q |
1 |
ttgaatattaatgcattgattttgttgtgccccctttgaatgtgtgtattgagaagtaatttctgttagtttcagtttcaagaaggaaaggtctatactt |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1844736 |
ttgaatattaatgcatcgattttgttgtgccccctttgaatgtgtgtattgagaagtaatttctgttagtttcagtttcaagaaggaaaggtctatactt |
1844835 |
T |
|
| Q |
101 |
ttacttcctgcttcttgtagaagatcatcaatactttggagttgtgtgtacaagtaagattgaatttagaagaatgcatgtaaaatggtgtatgatcttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1844836 |
ttacttcctgcttcttgtagaagatcatcaatactttggagttgtgtgtacaagtaagattgaatttagaagaatgcatgtaaaatggtgtatgatcttg |
1844935 |
T |
|
| Q |
201 |
tgttgttgaatttcctatgccaaatagatatggaatgtttatatctccacaagtat |
256 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1844936 |
tgttgttgaatttcctatgccaaatggatatggaatgtttatatctccacaagtat |
1844991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 1817976 - 1818055
Alignment:
| Q |
172 |
gaatgcatgtaaaatggtgtatgatcttgtgttgttgaatttcctatgccaaatagatatggaatgtttatatctccaca |
251 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||| |||||||||||||||||||||| |||||||||| ||| ||||||||| |
|
|
| T |
1817976 |
gaatccatgtaacatggtgtatgatgttgtgctgttgaatttcctatgccaaatggatatggaattgttaaatctccaca |
1818055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 1855206 - 1855149
Alignment:
| Q |
178 |
atgtaaaatggtgtatgatcttgtgttgttgaatttcctatgccaaatagatatggaa |
235 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
1855206 |
atgtaacatggtgtatgatcttgtgctgttgaatttcctatgccaaatggatatggaa |
1855149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 1829882 - 1829967
Alignment:
| Q |
11 |
atgcattgattttgttgtgccccctttgaatgtgtgtattgagaagtaatttctgttagtttcagtttcaagaaggaaaggtctatac |
98 |
Q |
| |
|
||||| |||||||| |||||| ||| ||||| |||||||| ||||||||||||||||||||| |||| ||| |||||||||||||||| |
|
|
| T |
1829882 |
atgcagtgattttgctgtgccacctgtgaatttgtgtatt-agaagtaatttctgttagtttaagttacaa-aaggaaaggtctatac |
1829967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University