View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16461_low_19 (Length: 270)
Name: NF16461_low_19
Description: NF16461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16461_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 1152734 - 1152480
Alignment:
| Q |
14 |
cttttaacatcaggatgactgtgaatggttttccaaacaaggatgcctgacagacagtaacccaaatcaaaagcatgctgtgttagaaatatgatactct |
113 |
Q |
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| T |
1152734 |
cttttaacatcaggaagactg--aatggtttcccaaacaaggatgcctgacag----taacccaaatcaaaagcatgctgtgttagaaagatggtactct |
1152641 |
T |
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| Q |
114 |
gactgtctgacatctttgtggatctcatcctgtgtgatattcatacaaggtttgtgtcaagaccaatcctcaattttaggatgaacaatgtatatatttt |
213 |
Q |
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| T |
1152640 |
gactgtctgacatctttgtggatctcatcctgtgtgatattcatacaaggtttgtgtcaagaccaatcctcaattttaggatgaacaatgtatatatttt |
1152541 |
T |
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| Q |
214 |
ttcg-------------aatctttaataatcttagttaacaccaatcaaaatcattcatct |
261 |
Q |
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| T |
1152540 |
tttggaaattttttatttatctttaataatcttagttaacaccaatcaaaatcattcatct |
1152480 |
T |
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