View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16461_low_24 (Length: 262)
Name: NF16461_low_24
Description: NF16461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16461_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 28270 - 28501
Alignment:
| Q |
14 |
aatatgtgttaaaaattgttatgtttccaatataattaatcattttctctgtaaaatatatatattggatacttttatttacttaaccaatggccatttt |
113 |
Q |
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| T |
28270 |
aatatgtgttaaaaattgttatgtttccaatataattaatcattttctctgtaaaatatatatattggatacttttatttacttaaccaatggccatttt |
28369 |
T |
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| Q |
114 |
tgttgaaaatatatgatttgtctttcttttcctactctgttgtgtgtttttcactcatcatgaaataaaatactaaatccaaatgannnnnnnagttgta |
213 |
Q |
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| T |
28370 |
tgttgaaaatatatcatttgtctttcttttcctactctgttgtgtgtctttcactcatcatgaaataaaatactaaatccaaatgatttttttagttgta |
28469 |
T |
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| Q |
214 |
tacgaaatgaatgtgaatagatgatgaaagga |
245 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
28470 |
tacgaaatgaatgtgaatagatgatgaaagga |
28501 |
T |
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