View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16461_low_27 (Length: 247)
Name: NF16461_low_27
Description: NF16461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16461_low_27 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 49123326 - 49123557
Alignment:
| Q |
16 |
accttcttgattcttggaaggaggtgtctgaagaggtatcaatatatctcgcaatgaaatgtaatttaatgtgttgtatacatgtattgcttctgtcctt |
115 |
Q |
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| T |
49123326 |
accttcttgattcttggaaggaggtgtctgaagaggtatcaatatatctcacaatgaaatgtaatttaatgtgttgtatacatgtattgcttctgtcctt |
49123425 |
T |
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| Q |
116 |
atgtcaacgttttttacagggacgacttgcctttcgggctctattctccagagaggtgttgccccaaagcttttcacctcctcatgatttgataagtaag |
215 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49123426 |
atgtcagcgtcttttacagggacgacttgcctttcgggctctattctccagagaggtgttgccccaaagcttttcacctcctcatgatttgataaataag |
49123525 |
T |
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| Q |
216 |
gataatcagatggacagcatgaaggataacga |
247 |
Q |
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|||||||||||||||| ||||||||||||||| |
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| T |
49123526 |
gataatcagatggacaacatgaaggataacga |
49123557 |
T |
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