View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16461_low_29 (Length: 238)
Name: NF16461_low_29
Description: NF16461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16461_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 36696178 - 36696399
Alignment:
| Q |
1 |
tttggttcagacaccattctataaaaatttcacaaccctaactaaaagttttagaaaattttgttatatggggttggtttaattatatttactatgggaa |
100 |
Q |
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| T |
36696178 |
tttggttcagacaccattctataaaaatttcacaaccctaactaaaagttttagaaaattttgttatatggggttggtttaattatatttattatgggaa |
36696277 |
T |
|
| Q |
101 |
atatttgaagcttctgctctattgaaaagcggaagagcagatagctttagaaggtatttgggtccataaatcctatttatagttgaggagagcacacaaa |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36696278 |
atatttgaagcttctgctctattgaaaactggaagagcagatagctttagaaggtatttgggtccatacatcctatttatagttgaggagagcacacaaa |
36696377 |
T |
|
| Q |
201 |
tcataagctgaagagaatgaag |
222 |
Q |
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|||||||||||| ||||||||| |
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| T |
36696378 |
tcataagctgaatagaatgaag |
36696399 |
T |
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