View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16461_low_32 (Length: 223)
Name: NF16461_low_32
Description: NF16461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16461_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 6399779 - 6399580
Alignment:
| Q |
1 |
ggaagagtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctgacaaagatggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6399779 |
ggaagagtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctgacaaagatggc |
6399680 |
T |
|
| Q |
101 |
ttcatagactttaaagagtttatggaaatgttcaatggagagggtagtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6399679 |
ttcatagactttaaagagtttatggaaatgttcaatggagaaggtagtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatg |
6399580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 6412723 - 6412922
Alignment:
| Q |
1 |
ggaagagtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctgacaaagatggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6412723 |
ggaagagtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctgacaaagatggc |
6412822 |
T |
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| Q |
101 |
ttcatagactttaaagagtttatggaaatgttcaatggagagggtagtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6412823 |
ttcatagactttaaagagtttatggaaatgttcaatggagaaggtagtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatg |
6412922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 6409980 - 6410176
Alignment:
| Q |
1 |
ggaagagtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctgacaaagatggc |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
6409980 |
ggaagagtataaagcagctgcaaaatctttggataaggggattg---gggatcctgatgcagtgaaagcatttaacgtgatggactctgacaaagatggc |
6410076 |
T |
|
| Q |
101 |
ttcatagactttaaagagtttatggaaatgttcaatggagagggtagtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatg |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
6410077 |
ttcatagactttaaagagttcatggaaatgttcaatggagaaaacaataagataaaagaagaggagattaagagtgcttttcaagtatttgatataaatg |
6410176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 6405395 - 6405258
Alignment:
| Q |
1 |
ggaagagtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctgacaaagatggc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| | | || | ||||||||||||||||||||| || ||||||| |||||||||||| |
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| T |
6405395 |
ggaagagtataaagcagctgcaaaagctttggataagggggtag---gggatactgatgcagtgaaagcatttaaggccatggactatgacaaagatgga |
6405299 |
T |
|
| Q |
101 |
ttcatagactttaaagagtttatggaaatgttcaatggaga |
141 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
6405298 |
ttcatagactttagagagtttatggaaatgttcaatggaga |
6405258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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