View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16461_low_4 (Length: 571)
Name: NF16461_low_4
Description: NF16461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16461_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 14680211 - 14680005
Alignment:
| Q |
18 |
agttaccatgtatgtgttaccnnnnnnngtaaccacctttgtattcttgttccatttaaaatataaactcaaaaattattctattgttttctctactttt |
117 |
Q |
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| T |
14680211 |
agttaccatgtatgtgttaccaaaaaaagtaaccacctttgtattcttgttccatttaaaatataaactcaaaaatcattctgttgttttctctactttt |
14680112 |
T |
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| Q |
118 |
cttgttaaaccaaatctatggtgttgtcctgtcaattcactgtttaattagtgaattgattgcttgaatatgaatccacatgcttctctaatctagaaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14680111 |
cttgttaaaccaaatctatggtgttgtcctgtcaattcactgtttaattagtgaattgattgcttgaatatgaatccccatgcttctctaatctagaaat |
14680012 |
T |
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| Q |
218 |
aatcatt |
224 |
Q |
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||||||| |
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| T |
14680011 |
aatcatt |
14680005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 318 - 485
Target Start/End: Complemental strand, 14690931 - 14690764
Alignment:
| Q |
318 |
tattttgtgccattttacctctctcacacagttcctcactcttcttcaaatcttcctcggcttgtaacctagcttgtctctccatatcaaacttctcttg |
417 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14690931 |
tattctgtgccattttagctctctcacacagttcctcactcttcttcaaatcttcctcagcttgtaacctagcttgtctctccatatcaaacttctctta |
14690832 |
T |
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| Q |
418 |
aagatgttgaatctctgctttgagtttgttgtctctactcactaaaacatcttcaacactatcaaatt |
485 |
Q |
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| T |
14690831 |
aagattttgaatctctgttttgagtttcttgtctctgctaactaaaatttcttcaacactatcaaatt |
14690764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 464
Target Start/End: Original strand, 41686474 - 41686620
Alignment:
| Q |
318 |
tattttgtgccattttacctctctcacacagttcctcactcttcttcaaatcttcctcggcttgtaacctagcttgtctctccatatcaaacttctcttg |
417 |
Q |
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|||||||||| || | ||||| ||||| |||||||| || || ||||||||||||| ||||| ||||| | | ||||||||| |||||||||||||| |
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| T |
41686474 |
tattttgtgctcttatccctctttcacaaagttcctctctttttctcaaatcttcctcagcttgaaacctcgttagtctctccaattcaaacttctcttg |
41686573 |
T |
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| Q |
418 |
aagatgttgaatctctgctttgagtttgttgtctctactcactaaaa |
464 |
Q |
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| T |
41686574 |
aagatgtagaatttcagcttgcagtttcttgtatctactcattaaaa |
41686620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 483
Target Start/End: Complemental strand, 41687846 - 41687693
Alignment:
| Q |
330 |
ttttacctctctcacacagttcctcactcttcttcaaatcttcctcggcttgtaacctagcttgtctctccatatcaaacttctcttgaagatgttgaat |
429 |
Q |
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|||| ||||| ||||| |||||||| || ||| ||| ||||||||| |||| ||||| | | || | ||||| ||||||||||||||||||||| |||| |
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| T |
41687846 |
ttttccctctttcacatagttcctctcttttcctcacatcttcctcaacttgaaaccttgttagtttttccatttcaaacttctcttgaagatgtagaat |
41687747 |
T |
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| Q |
430 |
ctctgctttgagtttgttgtctctactcactaaaacatcttcaacactatcaaa |
483 |
Q |
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| | || ||||| || |||||| |||||||||| ||||||||| ||||||| |
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| T |
41687746 |
tttcgtttgcagtttcttatctctagtcactaaaacctcttcaacattatcaaa |
41687693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 483
Target Start/End: Original strand, 41708852 - 41709017
Alignment:
| Q |
318 |
tattttgtgccattttacctctctcacacagttcctcactcttcttcaaatcttcctcggcttgtaacctagcttgtctctccatatcaaacttctcttg |
417 |
Q |
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|||||||||| |||| ||| | |||||||||||||| || || ||||||||||||||||||| ||||| | || | ||||||| |||| ||||||||| |
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| T |
41708852 |
tattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctcggcttgaaacctcgtttttttctccatttcaaccttctcttg |
41708951 |
T |
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| Q |
418 |
aagatgttgaatctctgctttgagtttgttgtctctactcactaaaacatcttcaacactatcaaa |
483 |
Q |
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| T |
41708952 |
aagatctataatctcattttctagtctcttatatctactcactaaaacctcttcaattctatcaaa |
41709017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 318 - 422
Target Start/End: Original strand, 41717924 - 41718028
Alignment:
| Q |
318 |
tattttgtgccattttacctctctcacacagttcctcactcttcttcaaatcttcctcggcttgtaacctagcttgtctctccatatcaaacttctcttg |
417 |
Q |
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|||||||||| |||| ||| | |||||||||||||| || || ||||||||||||||||||| ||||| | || | ||||||| |||| ||||||||| |
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| T |
41717924 |
tattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctcggcttgaaaccttgtttttttctccatttcaaccttctcttg |
41718023 |
T |
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| Q |
418 |
aagat |
422 |
Q |
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||||| |
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| T |
41718024 |
aagat |
41718028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 485
Target Start/End: Complemental strand, 14682419 - 14682340
Alignment:
| Q |
406 |
aaacttctcttgaagatgttgaatctctgctttgagtttgttgtctctactcactaaaacatcttcaacactatcaaatt |
485 |
Q |
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|||||||| ||||||||||||| |||||||| |||||| | | |||||||||||||| ||||||||||||||||||| |
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| T |
14682419 |
aaacttctgttgaagatgttgattctctgctcggagtttctcatatctactcactaaaatttcttcaacactatcaaatt |
14682340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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