View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16461_low_8 (Length: 423)
Name: NF16461_low_8
Description: NF16461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16461_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 26 - 405
Target Start/End: Complemental strand, 5811824 - 5811448
Alignment:
| Q |
26 |
gaagtggtgcccaagagttagatctagagggccaagaagatactttcggagaggatgttgccaatgataagtctcaagggactgcaaccgaggaagagga |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5811824 |
gaagtggtgcccaagagttagatctagagggccaagaagatattttcggagaggatgttgccaatgataagtctcaagggactgcaaccgaggaagagga |
5811725 |
T |
|
| Q |
126 |
gaaattatcaaatccagaagttaagaaataagttcctgagtcgtgtcgactgtttgtacgtaatctgccatacacgaccacgtactttcatagtgttttt |
225 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5811724 |
gaaattatcaaatccagaagttaagaaagaagttcctgagtcgtgtcgactgtttgtacgtaatctgccatacacgaccacgtactttcatagtgttttt |
5811625 |
T |
|
| Q |
226 |
cctgcttttccatttattatttttctactgaataaatatgtcttctgatagttaattttttatcttactaatatctttcaatgattttgtcatttcaatt |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5811624 |
cctgcttttccatttattatttttctactgaatgaatatgtcttccgacagttaattttttatcttactaatatctttcaatgattttgtcatttcaa-- |
5811527 |
T |
|
| Q |
326 |
gatcttaatatattaatcatgtgttggttttatcattttattgttattatgttgcagggaggaggaactggaagagtatt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5811526 |
-atcttaatatattaatcatgtgttggttttatcattttattgttattatgttgcagggaggaagaactggaagagtatt |
5811448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 7e-53; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 37743418 - 37743205
Alignment:
| Q |
1 |
aataacccttccgaaagaaacccaggaagtggtgcccaagagttagatctagagggccaagaagatactttcggagaggatgttgccaatgataagtctc |
100 |
Q |
| |
|
||||||||||| |||| || |||| |||||||||| ||||||||||||||||| | |||| || |||| | ||| |||||||||||||||||||||||| |
|
|
| T |
37743418 |
aataacccttctgaaacaaccccaagaagtggtgctcaagagttagatctagaagaccaaaaaaataccgttggaaaggatgttgccaatgataagtctc |
37743319 |
T |
|
| Q |
101 |
aagggactgcaaccgaggaagaggagaaattatcaaatccagaagttaagaaataagttcctgagtcgtgtcgactgtttgtacgtaatctgccatacac |
200 |
Q |
| |
|
||| || |||||| |||||||||| | |||||||||||||||||| ||||||| |||| ||||| |||||||||||||||| |||||||||||||| | |
|
|
| T |
37743318 |
aagtgaatgcaactgaggaagaggggcaattatcaaatccagaagataagaaaggagtttctgagccgtgtcgactgtttgtccgtaatctgccatattc |
37743219 |
T |
|
| Q |
201 |
gaccacgtactttc |
214 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
37743218 |
gaccacgtaatttc |
37743205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 37764601 - 37764393
Alignment:
| Q |
1 |
aataacccttccgaaagaaacccaggaagtggtgcccaagagttagatctagagggccaagaagatactttcggagaggatgttgccaatgataagtctc |
100 |
Q |
| |
|
|||||||||| ||||||| ||| |||||||||| ||||||||||||||||| | ||||||| ||||| | ||| ||||||| |||||||||||||||| |
|
|
| T |
37764601 |
aataacccttttgaaagaacaccaagaagtggtgctcaagagttagatctagaagaccaagaaaatactgttggaaaggatgtagccaatgataagtctc |
37764502 |
T |
|
| Q |
101 |
aagggactgcaaccgaggaagaggagaaattatcaaatccagaagttaagaaataagttcctgagtcgtgtcgactgtttgtacgtaatctgccatacac |
200 |
Q |
| |
|
||| || | |||| |||||||||| | |||||||||||||||||| ||||||| |||| ||||| |||||||||||||||| |||||||||||||| | |
|
|
| T |
37764501 |
aagtgaattcaactgaggaagaggggcaattatcaaatccagaagataagaaaggagtttctgagccgtgtcgactgtttgtccgtaatctgccatattc |
37764402 |
T |
|
| Q |
201 |
gaccacgta |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
37764401 |
gaccacgta |
37764393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 38601727 - 38601928
Alignment:
| Q |
13 |
gaaagaaacccaggaagtggtgcccaagagttagatctagagggccaagaagatactttcggagaggatgttgccaatgataagtctcaagggactgcaa |
112 |
Q |
| |
|
||||||| |||| |||||||||| ||||||||||||||||| | ||||||| ||||| | ||| ||||||| ||||||||||||||||||| || ||||| |
|
|
| T |
38601727 |
gaaagaaccccaagaagtggtgctcaagagttagatctagaagaccaagaaaatactgttggaaaggatgtagccaatgataagtctcaagtgaatgcaa |
38601826 |
T |
|
| Q |
113 |
ccgaggaagaggagaaattatcaaatccagaagttaagaaataagttcctgagtcgtgtcgactgtttgtacgtaatctgccatacacgaccacgtactt |
212 |
Q |
| |
|
| |||||||||| | ||||||||||||||||| ||||||| |||| ||||| |||||||||||||||| | |||||||||||| |||||||||| || |
|
|
| T |
38601827 |
ctgaggaagaggggcaattatcaaatccagaatataagaaaggagtttctgagccgtgtcgactgtttgtccttaatctgccatattcgaccacgtaatt |
38601926 |
T |
|
| Q |
213 |
tc |
214 |
Q |
| |
|
|| |
|
|
| T |
38601927 |
tc |
38601928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 348 - 401
Target Start/End: Original strand, 38602054 - 38602107
Alignment:
| Q |
348 |
gttggttttatcattttattgttattatgttgcagggaggaggaactggaagag |
401 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
38602054 |
gttggttttatatttttattgttattctgttgcagtgaggaggaactggaagag |
38602107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 401
Target Start/End: Complemental strand, 37743079 - 37743026
Alignment:
| Q |
348 |
gttggttttatcattttattgttattatgttgcagggaggaggaactggaagag |
401 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
37743079 |
gttggttttatatttttattgttattctgttgcagtgaggaggaattggaagag |
37743026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University