View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16462_high_1 (Length: 776)
Name: NF16462_high_1
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16462_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 671; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 20 - 768
Target Start/End: Original strand, 11550924 - 11551680
Alignment:
| Q |
20 |
tggaagagtatgcaagtagttttaccgatggtggttcaacaaaatgattgagttggcttttaattttatgaatatatatgtagttcatatttttatttgg |
119 |
Q |
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||||||||||||||| |||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11550924 |
tggaagagtatgcaaatagttttatcaatggtggttcgacaaaatgattgagttggcttttaattttatgaatatatatgtagttcatatttttatttgg |
11551023 |
T |
|
| Q |
120 |
tattgctatgatattgtctcatactgagttataa--------ctcaaaatgatttggggcacatgcttttcattttacatatttggtatcaaaatgacta |
211 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11551024 |
cattgctatgatattgtctcatactgagttataagtatttaactcaaaatgatttggggcacatgcttttcattttacatatttggtatcaaaatgacta |
11551123 |
T |
|
| Q |
212 |
atgactattgatcaccagtggatcttcatttcgctgcaagtacttcggtgccttatttgtttgattatttgagtgattatcactagttttactcacctag |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11551124 |
atgactattgatcaccagtggatcttcatttcgctgcaattacttcggtgccttatttgtttgattatttgagtgattatcactagttttactcacctag |
11551223 |
T |
|
| Q |
312 |
aatacaagtatcttgctgcttgaggtttgctttcttatgaagttcaacttttagttgtatttgatcatctctaattcctagaatctcattcaaataacca |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11551224 |
aatacaagtatcttgctgcttgaggtttgctttcttatgcagttcaacttttagttgtatttgatcatctctaattcctagaatctcattcaaataacca |
11551323 |
T |
|
| Q |
412 |
accataatttgtctcttctatatgtttgtttcgtttcaatttgaaattctactattttctgttggctgaaacagtttcaggtcaccctttttctttcata |
511 |
Q |
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| T |
11551324 |
accataatttgtctcttctatatgtttgtttcgtttcaatttgaaattctactattttctgttggctgaaacagtttcaggtcaccctttttctttcata |
11551423 |
T |
|
| Q |
512 |
caaaataatgcagttaccatttttctttgattcattcctatctatcatatagagaggatgnnnnnnngagtaaaacttgtgcagaacctgtcaattgtaa |
611 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
11551424 |
caaaataatgcagttaccatttttctttgattcattcctatctatcatatagagaggatgaaaaaaagagtaaaacttgtgcagaacctgtcaattgtca |
11551523 |
T |
|
| Q |
612 |
aggcttttcttcccgcaccagcctctcttctttgtctcataactttcaatttgaatgttcaaagtatgtagctcttcacagttccccaacaattgcctga |
711 |
Q |
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| T |
11551524 |
aggcttttcttcccgcaccagcctctcttctttgtctcataactttcaatttgaatgttcaaagtatgtagctcttcacagttccccaacaattgcctga |
11551623 |
T |
|
| Q |
712 |
gccacaagataaattttgtgtgaatgtcgatttgctttgtggtttccgttctctgct |
768 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11551624 |
gccacaagataaattttgtgtgaatgtcgatttcctttgtggtttccgttctctgct |
11551680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 432 - 768
Target Start/End: Original strand, 11546489 - 11546820
Alignment:
| Q |
432 |
tatgtttgtttcgtttcaatttgaaattctactattttctgttggctgaaacagtttcaggtcaccctttttctttcatacaaaataatgcagttaccat |
531 |
Q |
| |
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|||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11546489 |
tatgtttgtttcattttaatttgaaattatactattttctgttggctgaaacagtttcaggtcaccctttttctttcttacaaaataatgcagttaccat |
11546588 |
T |
|
| Q |
532 |
ttttctttgattcattc-----ctatctatcatatagagaggatgnnnnnnngagtaaaacttgtgcagaacctgtcaattgtaaaggcttttcttcccg |
626 |
Q |
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||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||| | || |||||||||| |
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| T |
11546589 |
ttttctttgattcattcatatgatatctatcatatagagtggatgaaaaaaagagtaaaacttgtgcagaacctgtc-------atggtttttcttccca |
11546681 |
T |
|
| Q |
627 |
caccagcctctcttctttgtctcataactttcaatttgaatgttcaaagtatgtagctcttcacagttccccaacaattgcctgagccacaagataaatt |
726 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| | || |
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| T |
11546682 |
caccagcctctcttctttgtctcataaatttcaatttgaatgtccaaagtatgtagctcttcacagttccccaacaa---cctgagccacaagagatgtt |
11546778 |
T |
|
| Q |
727 |
ttgtgtgaatgtcgatttgctttgtggtttccgttctctgct |
768 |
Q |
| |
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||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
11546779 |
ttgtgtgaatgtcaatttgttttgtggtttccgttctctgct |
11546820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 352 - 571
Target Start/End: Complemental strand, 11562216 - 11561998
Alignment:
| Q |
352 |
agttcaacttttagttgtatttgatcatctctaattcctagaatctcattcaaataaccaaccataatttgtctcttctatatgtttgtttcgtttcaat |
451 |
Q |
| |
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||||||| |||||| | ||||||||||||||||||| || || ||||||||||||||||| ||||| |||||||||||||||| |||||||| ||||||| |
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| T |
11562216 |
agttcaaattttagctatatttgatcatctctaattacttgactctcattcaaataacca-ccatagtttgtctcttctatatatttgtttcatttcaat |
11562118 |
T |
|
| Q |
452 |
ttgaaattctactattttctgttggctgaaacagtttcaggtcaccctttttctttcatacaaaataatgcagttaccatttttctttgattcattccta |
551 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
11562117 |
ttgaaattctactattttctcttggctgaaacagtttcaggtcaccctttttctttcatacaaaataatgaagttaccatttttctttgattcattcata |
11562018 |
T |
|
| Q |
552 |
tctatcatatagagaggatg |
571 |
Q |
| |
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|| ||||||||||| ||||| |
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| T |
11562017 |
tcaatcatatagagtggatg |
11561998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 153 - 365
Target Start/End: Original strand, 11546264 - 11546487
Alignment:
| Q |
153 |
actcaaaatgatttggggcacatgcttttcattttacatatttggtatcaaaa--------tgac---taatgactattgatcaccagtggatcttcatt |
241 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||| ||||||||| || | ||||| ||||||||||| | |||||||||||| |
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| T |
11546264 |
actcgaaatgatttggggaacatgcttttcattttacatatttcgtatcaaaagatatgtctgtcctataatggctattgatcactattggatcttcatt |
11546363 |
T |
|
| Q |
242 |
tcgctgcaagtacttcggtgccttatttgtttgattatttgagtgattatcactagttttactcacctagaatacaagtatcttgctgcttgaggtttgc |
341 |
Q |
| |
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|| |||||| ||||| |||||||||||||||| ||| |||||| ||||||||| ||| ||| ||||||||| ||||||| |||| ||||| || | |
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| T |
11546364 |
tcactgcaataacttcagtgccttatttgtttgcttagctgagtggttatcactaatttgacttgcctagaatataagtatcatgcttcttgaacttcac |
11546463 |
T |
|
| Q |
342 |
tttcttatgaagttcaacttttag |
365 |
Q |
| |
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|||||||| |||||||||||||| |
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| T |
11546464 |
tttcttattcagttcaacttttag |
11546487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 11562314 - 11562218
Alignment:
| Q |
20 |
tggaagagtatgcaagtagttttaccgatggtggttcaacaaaatgattgagttggcttttaattttatgaatatatatgtagttcatatttttatt |
116 |
Q |
| |
|
||||||| |||||||||||||||| | ||||||||| |||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
11562314 |
tggaagaatatgcaagtagttttatcaatggtggttagacaaaatgattgagtttgctttttattttatgaatctatatgtagttcatatttttatt |
11562218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 635 - 768
Target Start/End: Complemental strand, 11561957 - 11561830
Alignment:
| Q |
635 |
tctcttctttgtctcataactttca-atttgaatgttcaaagtatgtagctcttcacagttccccaacaattgcctgagccacaagataaattttgtgtg |
733 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||||||||||| || |||||| | ||||| |||||||||||| |
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| T |
11561957 |
tctcttctttgtctcatagatttcatatttgaaagttcaaattatgtagctcttcacagttccacatcaattgtc-------caagagaaattttgtgtg |
11561865 |
T |
|
| Q |
734 |
aatgtcgatttgctttgtggtttccgttctctgct |
768 |
Q |
| |
|
|||||| ||||| |||||||||| | ||||||||| |
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| T |
11561864 |
aatgtcaatttgttttgtggttttcattctctgct |
11561830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 11546195 - 11546264
Alignment:
| Q |
37 |
agttttaccgatggtggttcaacaaaatgattgagttggcttttaattttatgaatatatatgtagttca |
106 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
11546195 |
agttttattgatggtggttagacaaaatgattgagttggcttttaattttatgaatctatatgtatttca |
11546264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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