View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16462_high_12 (Length: 397)

Name: NF16462_high_12
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16462_high_12
NF16462_high_12
[»] scaffold0483 (1 HSPs)
scaffold0483 (182-334)||(3640-3806)
[»] scaffold0109 (1 HSPs)
scaffold0109 (182-334)||(48480-48646)
[»] chr6 (3 HSPs)
chr6 (275-373)||(18099027-18099127)
chr6 (224-334)||(14647821-14647931)
chr6 (182-223)||(14647765-14647806)
[»] chr7 (3 HSPs)
chr7 (233-347)||(20027639-20027753)
chr7 (186-223)||(20027779-20027816)
chr7 (118-154)||(20027893-20027929)
[»] scaffold0018 (1 HSPs)
scaffold0018 (182-334)||(125988-126154)
[»] chr4 (1 HSPs)
chr4 (182-334)||(14694239-14694405)
[»] chr8 (3 HSPs)
chr8 (182-333)||(6787684-6787851)
chr8 (225-333)||(6765256-6765364)
chr8 (182-223)||(6765380-6765421)
[»] chr2 (2 HSPs)
chr2 (233-334)||(28620305-28620406)
chr2 (182-223)||(28620431-28620472)


Alignment Details
Target: scaffold0483 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 182 - 334
Target Start/End: Original strand, 3640 - 3806
Alignment:
Q  182 tagttaatgattaacaaatgattgaatagtaaaatgaacatt--------------atatacatgttttttgtatgtgaccgattcgtcacccctcctaa 267  Q
    ||||||||||||||||||||||||||||| ||||||||||||              |||||| ||||||||  | |||||||| ||||||||||||||||    
T  3640 tagttaatgattaacaaatgattgaatagcaaaatgaacattttttgtgtatatcaatatacctgtttttttgaagtgaccgactcgtcacccctcctaa 3739  T
Q  268 cctcatcattaccattgcatttgtatattgcaggaatctatgtgtaattgattcagttagtgatcaa 334  Q
     | | ||||||||||||| ||| ||| ||||||||||||||||| |||||||||||| |||||||||    
T  3740 tcccgtcattaccattgcctttatatgttgcaggaatctatgtgaaattgattcagtcagtgatcaa 3806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 182 - 334
Target Start/End: Original strand, 48480 - 48646
Alignment:
Q  182 tagttaatgattaacaaatgattgaatagtaaaatgaacatt--------------atatacatgttttttgtatgtgaccgattcgtcacccctcctaa 267  Q
    ||||||||||||||||||||||||||||| ||||||||||||              |||||| ||||||||  | |||||||| ||||||||||||||||    
T  48480 tagttaatgattaacaaatgattgaatagcaaaatgaacattttttgtgtatatcaatatacctgtttttttgaagtgaccgactcgtcacccctcctaa 48579  T
Q  268 cctcatcattaccattgcatttgtatattgcaggaatctatgtgtaattgattcagttagtgatcaa 334  Q
     | | ||||||||||||| ||| ||| ||||||||||||||||| |||||||||||| |||||||||    
T  48580 tcccgtcattaccattgcctttatatgttgcaggaatctatgtgaaattgattcagtcagtgatcaa 48646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 275 - 373
Target Start/End: Complemental strand, 18099127 - 18099027
Alignment:
Q  275 attaccattgcatttgtatattgcaggaatctatgtgtaa-ttgattcagttagtgatcaaacaataaactaaaagtttctagcacaa-caaaaccaaaa 372  Q
    ||||||||||| ||||||| || ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| || || |||||||||||    
T  18099127 attaccattgcctttgtatgttacaggaatctatgtgtaaattgattcagtcagtgatcaaacaataaactaaaagtttctaccaaaatcaaaaccaaaa 18099028  T
Q  373 c 373  Q
    |    
T  18099027 c 18099027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 224 - 334
Target Start/End: Original strand, 14647821 - 14647931
Alignment:
Q  224 atatacatgttttttgtatgtgaccgattcgtcacccctcctaacctcatcattaccattgcatttgtatattgcaggaatctatgtgtaattgattcag 323  Q
    |||||| ||||||||  | |||||||| |||||||||||||||| | ||||||||||||||| ||| ||| |||||| |||||||||| |||||||||||    
T  14647821 atatacctgtttttttgaagtgaccgactcgtcacccctcctaatcccatcattaccattgcctttatatgttgcagaaatctatgtgaaattgattcag 14647920  T
Q  324 ttagtgatcaa 334  Q
    | |||||||||    
T  14647921 tcagtgatcaa 14647931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 14647765 - 14647806
Alignment:
Q  182 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 223  Q
    |||||||||||||||||||||||||| |  ||||||||||||    
T  14647765 tagttaatgattaacaaatgattgaaaaacaaaatgaacatt 14647806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 233 - 347
Target Start/End: Complemental strand, 20027753 - 20027639
Alignment:
Q  233 ttttttgtatgtgaccgattcgtcacccctcctaacctcatcattaccattgcatttgtatattgcaggaatctatgtgtaattgattcagttagtgatc 332  Q
    |||||| ||||||||||| || |||||| |||||| |||  |||||||||||  ||||||| |||||||||||||||||||| ||||| ||||||||||     
T  20027753 ttttttttatgtgaccgactcatcacccttcctaatctcgacattaccattgtctttgtatgttgcaggaatctatgtgtaactgattgagttagtgata 20027654  T
Q  333 aaacaataaactaaa 347  Q
    ||| |||||||||||    
T  20027653 aaataataaactaaa 20027639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 20027816 - 20027779
Alignment:
Q  186 taatgattaacaaatgattgaatagtaaaatgaacatt 223  Q
    |||||||||| |||||||||||||||||||||||||||    
T  20027816 taatgattaataaatgattgaatagtaaaatgaacatt 20027779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 20027929 - 20027893
Alignment:
Q  118 ttctttcaatttttgtgtttgaactgacatatttctt 154  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  20027929 ttctttcaatttttgtgtttgagctgccatatttctt 20027893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 182 - 334
Target Start/End: Original strand, 125988 - 126154
Alignment:
Q  182 tagttaatgattaacaaatgattgaatagtaaaatgaacatt--------------atatacatgttttttgtatgtgaccgattcgtcacccctcctaa 267  Q
    |||||||| |||||||||||||||||||| ||||||||||||              |||||| |||||||| || |||||||| ||||||||||||||||    
T  125988 tagttaattattaacaaatgattgaatagcaaaatgaacattttttgtgtatatcaatatacctgttttttttaagtgaccgactcgtcacccctcctaa 126087  T
Q  268 cctcatcattaccattgcatttgtatattgcaggaatctatgtgtaattgattcagttagtgatcaa 334  Q
     | | ||||||||||||| ||| ||| ||||||||||||||||| ||||||| |||| ||| |||||    
T  126088 tcccgtcattaccattgcctttatatgttgcaggaatctatgtgaaattgatgcagtcagtaatcaa 126154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 182 - 334
Target Start/End: Original strand, 14694239 - 14694405
Alignment:
Q  182 tagttaatgattaacaaatgattgaatagtaaaatgaacatt--------------atatacatgttttttgtatgtgaccgattcgtcacccctcctaa 267  Q
    ||||||||||||||||||||||||||||  ||||||||||||              |||||| ||||||||  | |||||||| ||||||||||||||||    
T  14694239 tagttaatgattaacaaatgattgaataacaaaatgaacattttttatgtatatcaatatacctgtttttttgaagtgaccgactcgtcacccctcctaa 14694338  T
Q  268 cctcatcattaccattgcatttgtatattgcaggaatctatgtgtaattgattcagttagtgatcaa 334  Q
     | | || |||||||||| ||| ||| ||||||||||||||||| |||||||||||| |||||||||    
T  14694339 tcccgtcgttaccattgcctttatatgttgcaggaatctatgtgaaattgattcagtcagtgatcaa 14694405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 182 - 333
Target Start/End: Complemental strand, 6787851 - 6787684
Alignment:
Q  182 tagttaatgattaacaaatgattgaatagtaaaatgaacat----------------tatatacatgttttttgtatgtgaccgattcgtcacccctcct 265  Q
    |||||||||||||| ||||||||||||||||||||||||||                ||||||| ||||||||  ||||| |||| ||||||||||||||    
T  6787851 tagttaatgattaataaatgattgaatagtaaaatgaacatttctagtgtatatcagtatatacctgtttttttgatgtggccgactcgtcacccctcct 6787752  T
Q  266 aacctcatcattaccattgcatttgtatattgcaggaatctatgtgtaattgattcagttagtgatca 333  Q
    || | ||||||||||||||| ||| ||| |||||||| ||||| || |||||||||||| ||||||||    
T  6787751 aatcccatcattaccattgcctttatatgttgcaggagtctatatgaaattgattcagtcagtgatca 6787684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 225 - 333
Target Start/End: Complemental strand, 6765364 - 6765256
Alignment:
Q  225 tatacatgttttttgtatgtgaccgattcgtcacccctcctaacctcatcattaccattgcatttgtatattgcaggaatctatgtgtaattgattcagt 324  Q
    ||||| ||||||||  ||||| |||| |||||||||||||||| | | ||||||||||||| ||| ||| |||| ||||||||| || ||||||||||||    
T  6765364 tatacctgtttttttgatgtggccgactcgtcacccctcctaatcccgtcattaccattgcctttatatgttgctggaatctatatgaaattgattcagt 6765265  T
Q  325 tagtgatca 333  Q
     ||||||||    
T  6765264 cagtgatca 6765256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 6765421 - 6765380
Alignment:
Q  182 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 223  Q
    |||||||||||||| ||||||||||||| |||||||||||||    
T  6765421 tagttaatgattaataaatgattgaataataaaatgaacatt 6765380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 233 - 334
Target Start/End: Complemental strand, 28620406 - 28620305
Alignment:
Q  233 ttttttgtatgtgaccgattcgtcacccctcctaacctcatcattaccattgcatttgtatattgcaggaatctatgtgtaattgattcagttagtgatc 332  Q
    |||||| ||||||||||| |||||||||||||| | ||| |||||| |||||  ||| ||| |||||||||| |||||| |||||||||||| | |||||    
T  28620406 ttttttttatgtgaccgactcgtcacccctcctgatctcgtcattatcattgtctttatatgttgcaggaatttatgtgaaattgattcagtcaatgatc 28620307  T
Q  333 aa 334  Q
    ||    
T  28620306 aa 28620305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 28620472 - 28620431
Alignment:
Q  182 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 223  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  28620472 tagttaatgattaacaaataattgaatagtaaaatgaacatt 28620431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University