View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16462_high_14 (Length: 366)
Name: NF16462_high_14
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16462_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 38613314 - 38613671
Alignment:
| Q |
1 |
taagcatgagttaatcaattcgggcaacttaagagcaaaaaacataaggagagtttggatttattattttgtatgttcacaacagtatggaaattgagct |
100 |
Q |
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| T |
38613314 |
taagcatgagttaatcaattcgggcaacttaagagcaaaaaacataagtagagtttggatttattattttgtatgttcacaacagtatgaaaattgagct |
38613413 |
T |
|
| Q |
101 |
ttatgaagcttcagtcaaaatgtatgattcttgataaggaattttaaggagaaaatggtccagagtgtgtggacatgatagaagatgctttgtcttgcat |
200 |
Q |
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| T |
38613414 |
ttatgaagcttcagtcaaaatgtataattcttgataaggaattttaaggagaaaatggtccagagtgtgtggacatgatagaagatgcttcgtcttgcat |
38613513 |
T |
|
| Q |
201 |
atgaaacgtaaaggtaggttcgtcaaaaatctttttcctctgtatcttccttccatccttaatgaaggatacaccttgatttcctgaatttatgttgttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38613514 |
atgaaacgtaaaggtaggttcgtcaaaaatctttttcctctgtatcttccttccatccttaatgaaggatataccttgatttcctgaatttatgttgttt |
38613613 |
T |
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| Q |
301 |
gatcccagttgttggatacccattgggagccttttgttcatgggtggagaataatcta |
358 |
Q |
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| T |
38613614 |
gatcccagttgttggatacccattgggagccttttgttcatgggtggagaataatcta |
38613671 |
T |
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