View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16462_high_15 (Length: 358)
Name: NF16462_high_15
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16462_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 4982164 - 4981864
Alignment:
| Q |
19 |
gaagccgcacgtggttcggaagaaggttttaaattcgacgacgacgatgataattcttttgtcgtcgtagtcgttgtcgttggtgattcgaataaagtac |
118 |
Q |
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| T |
4982164 |
gaagccgcacgtggttcggaagaaggttttaaattcgacgacgatgatgataattcttttgtggtcgtcgtcgttg------gtgattcgaataaagtgc |
4982071 |
T |
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| Q |
119 |
agagcttcttcaccattcttccacgtagagatgatttcattgactccattgaaccgtagaatttgcttaacgaaccggaccggtctagaaattcgttgaa |
218 |
Q |
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| T |
4982070 |
agatcttcttcaccattcttccacgtagagatgatttcattgactccattgaaccgtagaatttgcttaacgaaccggaccggtctagaaattcgttgaa |
4981971 |
T |
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| Q |
219 |
tggtttctgtgattgttcttttgatgacgtgtgcatcgtgttcgatcggttgaagaattgaaacctcgacatctttgaaaattcttcgaaaaattcgata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4981970 |
tggtttctgtgattgttcttttgatgacgtgtgcatcgtgttcgatcggttgaagaattgaaacctcgacatctttgaaaattcttcgaaaaattcgata |
4981871 |
T |
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| Q |
319 |
attcaac |
325 |
Q |
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||||||| |
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| T |
4981870 |
attcaac |
4981864 |
T |
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