View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16462_high_16 (Length: 343)
Name: NF16462_high_16
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16462_high_16 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 21531450 - 21531140
Alignment:
| Q |
19 |
gaacatatgtatatcctctaaatataaagaatgaaggctgctcaatgaattccttctcagcccatgaaggtttgaggttatgtaagaaacttgaacacaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21531450 |
gaacatatgtatatcctctaaatataaagaatgcaggctgctcaatgaattccttctcagcccatgaaggtttgaggttatgtaagaaacttgaacacaa |
21531351 |
T |
|
| Q |
119 |
tcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcgaagcagacattgaagcatcattaccatcagaatcatacctacata |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
21531350 |
tcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcaaagcagacattgaagcatcactaccttcagaatcatacctacata |
21531251 |
T |
|
| Q |
219 |
ccaaataacaaaacatagatacgattaacataaacataccaaaacaatagtagtatcatatatatatttatcagaaagtgttaacgcagttatcatgaaa |
318 |
Q |
| |
|
| ||||||| ||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21531250 |
ctaaataac-aaacataaatacgattaacataaacatatcaaaacaatagtagtatc--atatatatttatcagaaagtgttaacgcagttatcatgaaa |
21531154 |
T |
|
| Q |
319 |
ttaattcatctcac |
332 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
21531153 |
ttaattcatttcac |
21531140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 35167391 - 35167081
Alignment:
| Q |
19 |
gaacatatgtatatcctctaaatataaagaatgaaggctgctcaatgaattccttctcagcccatgaaggtttgaggttatgtaagaaacttgaacacaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35167391 |
gaacatatgtatatcctctaaatataaagaatgcaggctgctcaatgaattccttctcagcccatgaaggtttgaggttatgtaagaaacttgaacacaa |
35167292 |
T |
|
| Q |
119 |
tcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcgaagcagacattgaagcatcattaccatcagaatcatacctacata |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||| |
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|
| T |
35167291 |
tcagagtacactgatttgattccattcttagacgatggaattgaatcagatctcaaagcagacattgaagcatcactaccttcagaatcatacctacata |
35167192 |
T |
|
| Q |
219 |
ccaaataacaaaacatagatacgattaacataaacataccaaaacaatagtagtatcatatatatatttatcagaaagtgttaacgcagttatcatgaaa |
318 |
Q |
| |
|
| ||||||| ||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35167191 |
ctaaataac-aaacataaatacgattaacataaacatatcaaaacaatagtagtatc--atatatatttatcagaaagtgttaacgcagttatcatgaaa |
35167095 |
T |
|
| Q |
319 |
ttaattcatctcac |
332 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
35167094 |
ttaattcatttcac |
35167081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 17593663 - 17593973
Alignment:
| Q |
19 |
gaacatatgtatatcctctaaatataaagaatgaaggctgctcaatgaattccttctcagcccatgaaggtttgaggttatgtaagaaacttgaacacaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17593663 |
gaacatatgtatatcctctaaatataaagaatgcaggctactcaatgaattccttctcagcccatgaaggtttgaggttatgtaagaaacttgaacacaa |
17593762 |
T |
|
| Q |
119 |
tcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcgaagcagacattgaagcatcattaccatcagaatcatacctacata |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
17593763 |
tcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcaaagcagacattgaagcatcactaccttcagaatcatacctacata |
17593862 |
T |
|
| Q |
219 |
ccaaataacaaaacatagatacgattaacataaacataccaaaacaatagtagtatcatatatatatttatcagaaagtgttaacgcagttatcatgaaa |
318 |
Q |
| |
|
| ||||||| ||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17593863 |
ctaaataac-aaacataaatacgattaacataaacatatcaaaacaatagtagtatc--atatatatttatcagaaagtgttaacgcagttatcatgaaa |
17593959 |
T |
|
| Q |
319 |
ttaattcatctcac |
332 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
17593960 |
ttaattcatttcac |
17593973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 34743639 - 34743329
Alignment:
| Q |
19 |
gaacatatgtatatcctctaaatataaagaatgaaggctgctcaatgaattccttctcagcccatgaaggtttgaggttatgtaagaaacttgaacacaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34743639 |
gaacatatgtatatcctctaaatataaagaatgcaggctactcaatgaattccttctcagcccatgaaggtttgaggttatgtaagaaacttgaacacaa |
34743540 |
T |
|
| Q |
119 |
tcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcgaagcagacattgaagcatcattaccatcagaatcatacctacata |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
34743539 |
tcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcaaagcagacattgaagcatcactaccttcagaatcatacctacata |
34743440 |
T |
|
| Q |
219 |
ccaaataacaaaacatagatacgattaacataaacataccaaaacaatagtagtatcatatatatatttatcagaaagtgttaacgcagttatcatgaaa |
318 |
Q |
| |
|
| ||||||| ||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34743439 |
ctaaataac-aaacataaatacgattaacataaacatatcaaaacaatagtagtatc--atatatatttatcagaaagtgttaacgcagttatcatgaaa |
34743343 |
T |
|
| Q |
319 |
ttaattcatctcac |
332 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
34743342 |
ttaattcatttcac |
34743329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 94 - 265
Target Start/End: Complemental strand, 45551154 - 45550982
Alignment:
| Q |
94 |
ggttatgtaagaaacttgaacacaatcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcgaagcagacattgaagcatca |
193 |
Q |
| |
|
|||||||| ||||| | ||||||| | |||||||| |||| | ||||| | || || ||||||||||| |||| || ||||| ||||| |||||| |
|
|
| T |
45551154 |
ggttatgtgagaaagtggaacacagttagagtacaatgatctaattccgctgttagatgatggaattgatccagaccttaaagcaaccattgcagcatcc |
45551055 |
T |
|
| Q |
194 |
ttaccatcagaatcatacctacataccaaataacaaa-acatagatacgattaacataaacataccaaaacaa |
265 |
Q |
| |
|
||||| |||||||||||||| || |||||||| ||| | ||| ||| |||||||||||||||| || ||||| |
|
|
| T |
45551054 |
ttaccttcagaatcatacctgcagcccaaataataaacatataaatatgattaacataaacatatcataacaa |
45550982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 213
Target Start/End: Complemental strand, 45546584 - 45546457
Alignment:
| Q |
86 |
aggtttgaggttatgtaagaaacttgaacacaatcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcgaagcagacattg |
185 |
Q |
| |
|
||||| |||||||||||||| | | |||||| |||||||| |||||| | ||||| | || || |||| ||||||| |||| || ||||| ||||| |
|
|
| T |
45546584 |
aggttagaggttatgtaagagagtggaacacggtcagagtaaactgatctacttccactgttagatgatgaaattgaaccagagcttatagcagccattg |
45546485 |
T |
|
| Q |
186 |
aagcatcattaccatcagaatcatacct |
213 |
Q |
| |
|
|||||| ||||| |||||||||||||| |
|
|
| T |
45546484 |
cagcatccttaccttcagaatcatacct |
45546457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 43313691 - 43314001
Alignment:
| Q |
19 |
gaacatatgtatatcctctaaatataaagaatgaaggctgctcaatgaattccttctcagcccatgaaggtttgaggttatgtaagaaacttgaacacaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43313691 |
gaacatatgtatatcctctaaatataaagaatgcaggctgctcaatgaattccttctcagcccatgaaggtttgaggttatgtaagaaacttgaacacaa |
43313790 |
T |
|
| Q |
119 |
tcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcgaagcagacattgaagcatcattaccatcagaatcatacctacata |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
43313791 |
tcagagtacactgatttgattccattcttagacaatggaattgaatcagatctcaaagcagacattgaagcatcactaccttcagaatcatacctacata |
43313890 |
T |
|
| Q |
219 |
ccaaataacaaaacatagatacgattaacataaacataccaaaacaatagtagtatcatatatatatttatcagaaagtgttaacgcagttatcatgaaa |
318 |
Q |
| |
|
| ||||||| ||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43313891 |
ctaaataac-aaacataaatacgattaacataaacatatcaaaacaatagtagtatc--atatatatttatcagaaagtgttaacgcagttatcatgaaa |
43313987 |
T |
|
| Q |
319 |
ttaattcatctcac |
332 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
43313988 |
ttaattcatttcac |
43314001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 62 - 326
Target Start/End: Original strand, 50134716 - 50134974
Alignment:
| Q |
62 |
aatgaattccttctcagcccatgaaggtttgaggttatgtaagaaacttgaacacaatcagagtacactgatttgattccattcttggacgatggaattg |
161 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| |||||||||| |
|
|
| T |
50134716 |
aatgaataccttctcagcccccgaaggtttgaggttatgtaagaaacttgaacacaatcagagtacactgatttgcttccattgtcggatgatggaattg |
50134815 |
T |
|
| Q |
162 |
aatcagatctcgaagcagacattgaagcatcattaccatcagaatcatacctacataccaaataacaaaacatagatacgattaacataaacataccaaa |
261 |
Q |
| |
|
|| ||| || ||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||| ||| |||||||||||||||| |||| |
|
|
| T |
50134816 |
aactagagcttaaagtggacattgaagcatcattaccttcagaatcatacctacataccaaataac-aaatataaatatgattaacataaacatatcaaa |
50134914 |
T |
|
| Q |
262 |
acaatagtagtatcatatatatatttatcagaaagtgttaacgcagttatcatgaaattaattca |
326 |
Q |
| |
|
|| ||||||||| |||||| ||| ||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
50134915 |
ac---agtagtatc--atatattttttgcagaaagtgttaacgcagttatcctgaaatcaattca |
50134974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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