View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16462_high_20 (Length: 275)
Name: NF16462_high_20
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16462_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 44643686 - 44643439
Alignment:
| Q |
17 |
agggacaagccaacaaagttttaatttggcaaacaattgtctttgaatacattacaaaactaaccaccttcgttttcactagtgctttatgtttttaaaa |
116 |
Q |
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| T |
44643686 |
agggacaagccaacaaagttttaatttggcaaacaattgtctttgaatacattacaaaactaaccaccttcgttttcactagtgctttatgtttttaaaa |
44643587 |
T |
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| Q |
117 |
ataataaattgttgctattcattcatctgtttgttgttttgccactgtttcgatgtccctctgaaattatagtacatgaataaagaagaatcaatggaga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44643586 |
ataataaattgttgctattcattcatctgtttgttgttttgccaccgtttcgatgtccctctgaaattatagtacacgaataaagaagaatcaatggaga |
44643487 |
T |
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| Q |
217 |
atcaagtacaagaagacatgaagatatctttcaatattccacaggttc |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44643486 |
atcaagtacaagaagacatgaagatatctttcaatattccacaagttc |
44643439 |
T |
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