View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16462_high_3 (Length: 712)
Name: NF16462_high_3
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16462_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 356 - 698
Target Start/End: Complemental strand, 7340438 - 7340099
Alignment:
| Q |
356 |
aagataaattgcattttcaggttaatttgggataaattaaatatgtttcttaaggttataagttgacttctgctgttgaaaaaattagcattcttttcta |
455 |
Q |
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| T |
7340438 |
aagataaattgcattttcaggtgaatttgggataaattaaatatgtttcttaaggttataagttgacttctgctgttgaaaaaattagcattcttttcta |
7340339 |
T |
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| Q |
456 |
ggtgttcttcaacttttgattcccccagtcctaaatcaattgatttttaatgttttcaaacgtattnnnnnnngtgaagcatgtattattatttgacaaa |
555 |
Q |
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| T |
7340338 |
ggtgttcttcaacatttgattcccccagtcctaaatcaattgatttttaatgtcttcacacgtattaaaaaaagtgaagcatgtattatttt---acaaa |
7340242 |
T |
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| Q |
556 |
taataatctttattaattatttgaatattaaccacatggcatacattcatgttgtagtattttttgttgttacagaaaatttagattaagagaggcacag |
655 |
Q |
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| T |
7340241 |
taataatctttattaattatttgaatattaaccacatggcatacattcatgttgtagtattttttgttgttacagaaaatttagattaagagaggcacag |
7340142 |
T |
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| Q |
656 |
ttcaccaagaattatcaattttagtgaagatttgtagtataat |
698 |
Q |
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| T |
7340141 |
ttcaccaagaattatcaattttagtgaagatttgtagtataat |
7340099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 7340777 - 7340513
Alignment:
| Q |
19 |
gataaagctacttatcctaagcttttgggattggaaaaatctaaggagtttgctgacaaattgattaaggatgcacatgattgtctcattggatttgatg |
118 |
Q |
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| T |
7340777 |
gataaagctacttatcctaagcttttgggattggaaaaatctaaggagtttgctgacaaattgattaaggatgcgcatgattgtctcattggatttgatg |
7340678 |
T |
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| Q |
119 |
ttgaaaaggctgctcctttagttgctttaaccaattatattgcttataggcaaaattaaagttatagtttttaatttgtttaggataaaaataaaattgg |
218 |
Q |
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| T |
7340677 |
ttgaaaaggctgctcctttagttgctttaaccaattatattgcttataggcaaaattaaagttatagtttttaatttgtttaggataaaaataaaattgg |
7340578 |
T |
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| Q |
219 |
tgttatgaaaacattggatgcaagtgagatgcagacacaaaatgtttgtactatcatattgaaat |
283 |
Q |
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| T |
7340577 |
cgttatgaaaacattggatgcaagtaagatgcagacacaaaatgtttgtactatcatattgaaat |
7340513 |
T |
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