View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16462_high_5 (Length: 540)
Name: NF16462_high_5
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16462_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 35 - 312
Target Start/End: Original strand, 4274621 - 4274898
Alignment:
| Q |
35 |
atagctgaatatggtgtttcatcatcctctgtagtgttgagatcgattaaccccatgtgagaaagtttctatttttagcaatgttaacaagtgggtatga |
134 |
Q |
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| T |
4274621 |
atagctgaatatggtgtttcatcatcctctgtagtgttgagatcgattaaccccatgtgagaaagtttctttttttagcaatgttaacaagtgggtatga |
4274720 |
T |
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| Q |
135 |
actatgaagaagttctatagttgtttttgtgaagattattttttcaaagactgatttcatgactgcattttttcacagtttgtgaggttttgttgagtaa |
234 |
Q |
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| T |
4274721 |
actatgaagaagttctatagttgtttttgtgaagattattttttcaaagactgatttcatgactgcattttttcacagtttgtgaggttttgttgagtaa |
4274820 |
T |
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| Q |
235 |
ctttggcattgctaaaaagaaagagactttctttctctctcttcctccactgagctatcactctctcagctgaattcc |
312 |
Q |
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| T |
4274821 |
ctttggcattgctaaaaagaaagagactttctttctctctcttcctccactgagctatcactctctcagctgaattcc |
4274898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 376 - 520
Target Start/End: Original strand, 4274965 - 4275109
Alignment:
| Q |
376 |
gacgatgttggttcgatatattagagtaagttttgatatattagagtaagtttctctaaagatctaaggttaaatccttcttacgtcaatttatgcgtgt |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4274965 |
gacgatgttggttcgatatattagagtaagttttgatatattggagtaagtttctcttaagatctaaggttaaatccttcttacgtcaatttatacgtgt |
4275064 |
T |
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| Q |
476 |
tagttacgtctttgataatgaaatatgagatcaatcgttttgatt |
520 |
Q |
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| T |
4275065 |
tagttatgtctttgataatgaaatatgagatcaatcgttttgatt |
4275109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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