View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16462_high_6 (Length: 520)
Name: NF16462_high_6
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16462_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 20 - 510
Target Start/End: Original strand, 29298888 - 29299376
Alignment:
| Q |
20 |
tttgtgatctctaatatggggttctctttcagatgatgaaaagcaggccaaggtcagatatttatatcaatctcccagcactgcagaagcttgacacaat |
119 |
Q |
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| T |
29298888 |
tttgtgatctctaatatggtgttctctttcagatgatgaaaagcaggccaaggtcagatatttatatcaatctcccagcactgcagaagcttgacacaat |
29298987 |
T |
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| Q |
120 |
gcttatagtaagaaagacatcatttgcttctttcatgtgagaactaagtttttcatcaagttcttgtgactgataaacatgacaatgttgtttacaggaa |
219 |
Q |
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| T |
29298988 |
gcttatagtaagaaa--cctcatttgcttctttcatgcgagaactaagtttttcatcaagttcttgtgactgataaacatgacaatgttgtttacaggaa |
29299085 |
T |
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| Q |
220 |
atattagattcttttgaggatactgaattctggtatgcagagaacgtatcagcaagttcgcctcgtttacgtgcagcctcgtttcgaaggattgctccaa |
319 |
Q |
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| T |
29299086 |
atattagattcttttgaggatactgaattctggtatgcagagaacgtatcagcaagttcgcctcgtttacgtgcagcctcgtttcgaaggattgctcaaa |
29299185 |
T |
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| Q |
320 |
ggaaagacgagaaatggtggttgccagttccttgtgttctccctggtggcctctctgagaagtcaaggaaacaccttacagagaaaagggattgtgctaa |
419 |
Q |
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| T |
29299186 |
ggaaagacgagaaatggtggttgccagttccttgtgttctccctggtggcctctctgagaagtcaaggaaacaccttacagagaaaagggattgtgctaa |
29299285 |
T |
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| Q |
420 |
tcaaattcttaaagcagcaatggcgataaatagtaatattcttgcagatatagatattcctgaaacatatatagatgatcttccacaggtt |
510 |
Q |
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| T |
29299286 |
tcaaattcttaaagcagcaatggcgataaatagtaatattcttgcagatatagatattcctgaaacatatatagatgatcttccacaggtt |
29299376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 5e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 292 - 488
Target Start/End: Complemental strand, 11475903 - 11475707
Alignment:
| Q |
292 |
gcagcctcgtttcgaaggattgctccaaggaaagacgagaaatggtggttgccagttccttgtgttctccctggtggcctctctgagaagtcaaggaaac |
391 |
Q |
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| T |
11475903 |
gcaggctcgtttcgaattattgctcaaagaaaagatgagaaatggtggttgccagttccttgtgttcacactggtggcctctctgataagtcaaggaagc |
11475804 |
T |
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| Q |
392 |
accttacagagaaaagggattgtgctaatcaaattcttaaagcagcaatggcgataaatagtaatattcttgcagatatagatattcctgaaacata |
488 |
Q |
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| T |
11475803 |
atttgattgagaaaagagattgtgctaatcaaattcataaagcagctatggcaataaatagcagtgttcttgcagagatggacattccagaaacata |
11475707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 11476182 - 11476094
Alignment:
| Q |
44 |
tctttcagatgatgaaaagcaggccaaggtcagatatttatatcaatctcccagcactgcagaagcttgacacaatgcttatagtaaga |
132 |
Q |
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| T |
11476182 |
tctttcagatgatgacaagtagaccaagggcagatatttatataaaccttccagctctacagaagcttgacacgatgcttatagtaaga |
11476094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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