View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16462_high_8 (Length: 474)
Name: NF16462_high_8
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16462_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 72 - 458
Target Start/End: Original strand, 40385769 - 40386155
Alignment:
| Q |
72 |
acacaactgcaaagctggacagctgcctaaacaccaacacccccaacctccacaccatcacaaccgggtaggtggccgacttaggcaccattgagagttc |
171 |
Q |
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||||||| |||| |||||||||||| |||||||||| | ||| |||| | ||| ||||| |||| |||| ||||||||||||||||| |||| |||| |
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| T |
40385769 |
acacaacaccaaatctggacagctgcaaaaacaccaactcacccgaccttcgcacagtcacagccggttagggggccgacttaggcaccaatgagggttc |
40385868 |
T |
|
| Q |
172 |
caacaccactcaaaaaataaacaaactggtatactcattccactcattgtccatttccaagccaacactttcgcctcttccacaatggcatccaactcca |
271 |
Q |
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| T |
40385869 |
caacaccattcaaaaaatagacaaactggtatactcattccactcatcgcccatttccatgccaacactttcgcctcttccacaatgacatccacctcca |
40385968 |
T |
|
| Q |
272 |
aaatagcatcattaaaagctatgtcattccgggttttccacaacacccaaatagtagccaaccaaattaaccccttcccctttttaatcttcttcactct |
371 |
Q |
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|||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| |||||||| ||||| |
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| T |
40385969 |
aaattgcatcatcgaaaactatgtcattccgggttttccacaacacccaaatagtagctaaccaaattcaccccttgccctttttgatcttcttaactct |
40386068 |
T |
|
| Q |
372 |
ttcctctccatgccaacatttccaatgaacaaaaagattaggatgagaaataaagaagtgattaagccacctcatcaacttaagcca |
458 |
Q |
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| T |
40386069 |
ttcctctccatgccaacattcccaatgaacaaaaagattaggcggagaaataaaaaagtgactgagtcacctcatcaacttaagcca |
40386155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 157 - 407
Target Start/End: Complemental strand, 3700673 - 3700423
Alignment:
| Q |
157 |
caccattgagagttccaacaccactcaaaaaataaacaaactggtatactcattccactcattgtccatttccaagccaacactttcgcctcttccacaa |
256 |
Q |
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| T |
3700673 |
caccatttagggttccaacactactcaaaaaattgacaaaccggaatacacaacttactcatcacccacttccaagccaacactttcacctcttcaacaa |
3700574 |
T |
|
| Q |
257 |
tggcatccaactccaaaatagcatcattaaaagctatgtcattccgggttttccacaacacccaaatagtagccaaccaaattaaccccttccccttttt |
356 |
Q |
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| T |
3700573 |
ttgcatccacctctacattaacatcgttaaaaactttctcatttcgggtattccataacacccaaatggtagcaagccaaattatccccttacccttttt |
3700474 |
T |
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| Q |
357 |
aatcttcttcactctttcctctccatgccaacatttccaatgaacaaaaag |
407 |
Q |
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| T |
3700473 |
gaccttcttgtcgctctccccttcatgccaacactcccaatgaacaaaaag |
3700423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 128 - 458
Target Start/End: Original strand, 26446976 - 26447306
Alignment:
| Q |
128 |
atcacaaccgggtaggtggccgacttaggcaccattgagagttccaacaccactcaaaaaataaacaaactggtatactcattccactcattgtccattt |
227 |
Q |
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|||||| ||||||||| | || | | ||||||||||||| ||| |||||||||||||||||||| ||||| || |||| ||||| || ||| | ||| || |
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| T |
26446976 |
atcacagccgggtaggggacctattgaggcaccattgagggtttcaacaccactcaaaaaataagcaaaccggaatacgcattctacacatcgcccactt |
26447075 |
T |
|
| Q |
228 |
ccaagccaacactttcgcctcttccacaatggcatccaactccaaaatagcatcattaaaagctatgtcattccgggttttccacaacacccaaatagta |
327 |
Q |
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|||||||||||||||| ||| |||||||||| |||||| ||| ||| |||||||||| ||| || | ||||||||||||||||||||| ||||||| || |
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| T |
26447076 |
ccaagccaacactttcaccttttccacaatgacatccacctcaaaattagcatcattgaaaactttatcattccgggttttccacaacgcccaaatggtt |
26447175 |
T |
|
| Q |
328 |
gccaaccaaattaaccccttcccctttttaatcttcttcactctttcctctccatgccaacatttccaatgaacaaaaagattaggatgagaaataaaga |
427 |
Q |
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|| | |||||||| |||||| |||||||| | |||||| ||||||||| ||||||||||||||| |||||| |||||||| |||||| |||||||||| |
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| T |
26447176 |
gctagccaaattatccccttaccctttttgaccttcttaactctttcccctccatgccaacattcccaatggacaaaaaggttaggaggagaaataaaag |
26447275 |
T |
|
| Q |
428 |
agtgattaagccacctcatcaacttaagcca |
458 |
Q |
| |
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| T |
26447276 |
agtgatttaaccaccgcatcaacttaagcca |
26447306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 41600641 - 41600594
Alignment:
| Q |
26 |
aaactccccaaaaatacatactgcaaaggccaaaagaaccagtaggac |
73 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
41600641 |
aaactccccaaaaatacctgctgcaaaggccaaaagaaccagtaggac |
41600594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 7752694 - 7752906
Alignment:
| Q |
15 |
cacagagactaaaa-ctccccaaaaatacatactgcaaaggccaaaagaaccagtaggacacaactgcaaagctggacagctgcctaaacaccaacaccc |
113 |
Q |
| |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
7752694 |
cacagagactaaaaactccccaaaaatacatattgcaaaggccaaaagaaccagcaggacaca----------------gctgcctaaacaccaacaccc |
7752777 |
T |
|
| Q |
114 |
ccaacctccacaccatcacaaccgggtaggtggccgacttaggcaccattgagagttccaacaccactcaaaaaataaacaaactggtatactcattcca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| ||| | |
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| T |
7752778 |
ccaacctccacaccatcacaaccgggtaggtggccgacttaggcaccattgagggttccaacaccactctaaaaataaacaaaccggtatactcgttcaa |
7752877 |
T |
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| Q |
214 |
ctcattgtccatttccaagccaacacttt |
242 |
Q |
| |
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||| | ||||||||||||||||||||||| |
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| T |
7752878 |
ctcctcgtccatttccaagccaacacttt |
7752906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 157 - 407
Target Start/End: Complemental strand, 49456938 - 49456688
Alignment:
| Q |
157 |
caccattgagagttccaacaccactcaaaaaataaacaaactggtatactcattccactcattgtccatttccaagccaacactttcgcctcttccacaa |
256 |
Q |
| |
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|||||||| | ||||||||||||||||||| | |||||| ||| || ||||| |||||||||||| ||||| |||||||||||| |||| ||||||| |
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| T |
49456938 |
caccattgtgggttccaacaccactcaaaatacaaacaagttggaatgtgcattctactcattgtccacttccacgccaacactttcacctcctccacaa |
49456839 |
T |
|
| Q |
257 |
tggcatccaactccaaaatagcatcattaaaagctatgtcattccgggttttccacaacacccaaatagtagccaaccaaattaaccccttccccttttt |
356 |
Q |
| |
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|| | |||| ||| || || ||||| ||| | |||||||||| |||||||||||||||||||| | || |||||||||| |||||| || ||||| |
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| T |
49456838 |
tgtcgtccacctcaaagttattgtcattgaaaattttgtcattccgcgttttccacaacacccaaattattgctaaccaaattatccccttgccattttt |
49456739 |
T |
|
| Q |
357 |
aatcttcttcactctttcctctccatgccaacatttccaatgaacaaaaag |
407 |
Q |
| |
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| T |
49456738 |
gatgttcttatctctttctcttccaagccaacactcccaatgaataaaaag |
49456688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 17990396 - 17990438
Alignment:
| Q |
154 |
aggcaccattgagagttccaacaccactcaaaaaataaacaaa |
196 |
Q |
| |
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||||||||||||| |||||||||||| | |||||||||||||| |
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|
| T |
17990396 |
aggcaccattgagggttccaacaccattaaaaaaataaacaaa |
17990438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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