View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16462_high_9 (Length: 462)
Name: NF16462_high_9
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16462_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 3414549 - 3414983
Alignment:
| Q |
18 |
atgaggctacatcttgaatcggaaattcagatttgggggtagagatgcgcaatgacatattaaggttaaagagaggtcatagagatatttggtttagata |
117 |
Q |
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| T |
3414549 |
atgaggctacatcttgaatcggaaattcagatttgggggtagagatgcgcaatgacatattaaggttaaagagaggtcagagagatatttggtttagata |
3414648 |
T |
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| Q |
118 |
gctacacaaatttgtctctcgatcctaaaatgcttactttagcatgaaagggtcttgaaagatatttgcttaatttaacacaaaccaatctagaatattg |
217 |
Q |
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| T |
3414649 |
actacacaaatttgtctctcgatcctaaaatgcttactttagcatgaaagggtcttgaaagatatttgcttaatttaacacaaaccaatctagaatattg |
3414748 |
T |
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| Q |
218 |
atttgaaacagaccctttcaagtttttgagatcgaactaggtcaagaacgttggtggagcagcggtttaaccacaccaactgttaacccgaaacaaccca |
317 |
Q |
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| T |
3414749 |
atttgaaacagaccctttcaagtttttgagatcgaactaggtcaagaacattggtggagcagcggtttaaccacaccaacggttaacccaaaacaaccca |
3414848 |
T |
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| Q |
318 |
cactaatcaatccactacatgaaaccccacccaaatagttgcaatgacaaacgatttaacggaaactagtagcaaatatcagtgaatcagaacaagatgt |
417 |
Q |
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| T |
3414849 |
cactaatcaatccactacacgaaaccccacccaaatagttgcaatgacaaacgatttaacggaaactagtagcaaatatcagtgaatcagaacaagatgt |
3414948 |
T |
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| Q |
418 |
catagatcatgagccaacataaacgataacctatg |
452 |
Q |
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| T |
3414949 |
catagatcatgagccaacataaacgataacctatg |
3414983 |
T |
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