View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16462_low_13 (Length: 408)
Name: NF16462_low_13
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16462_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 38613158 - 38612787
Alignment:
| Q |
18 |
atgaaaccacaagaattacatgagagttacaaaaacttaaaacttcaccaagccacggtatagatgtagggtttatggattaaattaaagattatcgata |
117 |
Q |
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| T |
38613158 |
atgaaaccacaagaattacatgagagttacaaaaacttaaa-cttcaccaagccacggtatagatgtagggtttatggattaaattaaagattatcgata |
38613060 |
T |
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| Q |
118 |
agccgactccaatttaattacccacatgtgctaacctatgaagtacctacacaaacaccggatgcgacacccatgctagcataataattatagaaaatga |
217 |
Q |
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| T |
38613059 |
agccgactccaatttaattacccacatgtgctaacctatgaagtacctacacaaacaccggatgcgacacccacgctagcataataattatagaaaatga |
38612960 |
T |
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| Q |
218 |
attaactgaatgcactcgcatgtgtcggggtcggacaccaaacatgccttagatcagaaatgtcgatgcaacaaaggggctaacactaactaaatttgtt |
317 |
Q |
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| T |
38612959 |
attaactgaatgtactcgcatgtgtc-gtgtcggacaccaaacatgccttagatcagaaatgtcgatgctacaaaggggctaacactaactaaatttgtt |
38612861 |
T |
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| Q |
318 |
ttcgagagaagcgtcaaaagataaattgcacagataatcacgactcccatatttgcaaaactgaagttagtaaa |
391 |
Q |
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| T |
38612860 |
ttcgagagaaacatcaaaagataaattgcacagataatcacgactaccatatttgcaaaactgaagttagtaaa |
38612787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 6424239 - 6424171
Alignment:
| Q |
214 |
atgaattaactgaatgcactcgcatgtgtcggggtcggacaccaaacatgccttagatcagaaatgtcg |
282 |
Q |
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| T |
6424239 |
atgaattaattcaatgcaatcacatgtgtcggtgtcagacaccaaacatgccttcgatcagaattgtcg |
6424171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 6294588 - 6294544
Alignment:
| Q |
198 |
ataataattatagaaaatgaattaactgaatgcactcgcatgtgt |
242 |
Q |
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| T |
6294588 |
ataataatttgagaaaatgaattaattgaatgcaatcgcatgtgt |
6294544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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