View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16462_low_15 (Length: 386)
Name: NF16462_low_15
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16462_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 181 - 370
Target Start/End: Original strand, 3855695 - 3855880
Alignment:
| Q |
181 |
ttgttcataatttatttatacataaaaatgtttatttcccttttatttattttnnnnnnnggaaatagcaaagaatacttgataaaattatttattttgg |
280 |
Q |
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| T |
3855695 |
ttgttcataatttatttatacataaaaatgtttatttcccctttattt----taaaaaaaggaaatagcaaagaatacttgataaaattatttattttgg |
3855790 |
T |
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| Q |
281 |
tgtttgacaagcgtgatcatctgcttctacatcattctttgtgcgatggggtaatgatgaaagactacacaattccaatttagaatttgt |
370 |
Q |
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| T |
3855791 |
tgtttgacaagcgtgatcatctgcttctacatcattctttgtgcgatggggtaatgttgaaagactacacaattccaatttagaatttgt |
3855880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 3855552 - 3855702
Alignment:
| Q |
1 |
ccattgactacagggtgaagccaacgaagcaacgaggcagagttgcaaaagcaagacgcagacaaaagagttaacgttttgataggaggctgtctgtcaa |
100 |
Q |
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| T |
3855552 |
ccattgactacagggtgaagccaacgaagcaacgaggcagagttgcaaaagcaagacgcagacaaaagagttaatgttttgataggaggctgtctgtcaa |
3855651 |
T |
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| Q |
101 |
agataaaggacttcgccattgatatataaagattataggcgtcttggtcat |
151 |
Q |
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| T |
3855652 |
agataaaggacttcgccattgatatataaagattataggcgtcttgttcat |
3855702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 4141041 - 4140973
Alignment:
| Q |
31 |
aacgaggcagagttgcaaaagcaagacgcagacaaaagagttaacgttttgataggaggctgtctgtca |
99 |
Q |
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| T |
4141041 |
aacgaggcagagttgcagaagcgagacgcggacaaaagagttaatgttttgataggtagctgtctgtca |
4140973 |
T |
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