View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16462_low_19 (Length: 319)
Name: NF16462_low_19
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16462_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 22 - 302
Target Start/End: Complemental strand, 32990150 - 32989864
Alignment:
| Q |
22 |
tgatttgtattagcttgatttatagctttagtaacgtgtgatacaggcatatggaaggaataaggcaatcccacctacatggaaaacattatggtcacac |
121 |
Q |
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| T |
32990150 |
tgatttgtattagcttgatttatagctttagtaacgtgtgatacaggcatatggaaggaataaggcaatcccacctacatggaaaacattatggtcacac |
32990051 |
T |
|
| Q |
122 |
atgtttcttctataagtggatcatgaatccattatgtattggtatcaatagtgtcttgtgacggatttctatagaagttggttggttgaggggttctgtt |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32990050 |
atgtttcttctataagtggatcatgaatccattatgtattgatatcaatagtgtcttgtgacggatttctataaaagttggttggttgaggggttctgtt |
32989951 |
T |
|
| Q |
222 |
cttagtcttactcttgttctattgtggttgggtgttcctgat------agaagtgtagttagttttctggtatttgttttaactttc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||| ||||| |
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| T |
32989950 |
cttagtcttactcttgttctattgtggttgggtgttcctgatagaaatagaagtgtagttagttttccggtgtttgttttagctttc |
32989864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 265
Target Start/End: Original strand, 15974829 - 15974991
Alignment:
| Q |
103 |
gaaaacattatggtcacacatgtttcttctataagtggatcatgaatccattatgtattggtatcaatagtgtcttgtgacggatttctatagaagttgg |
202 |
Q |
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| T |
15974829 |
gaaaacattttggtcacgcgtgtttcttttatgagtgggtcatgaaacctttttgtgttggcaacggtagtgtcttgcgatgaatttgtctagaggttgg |
15974928 |
T |
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| Q |
203 |
ttggttgaggggttctgttcttagtcttactcttgttctattgtggttgggtgttcctgatag |
265 |
Q |
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| T |
15974929 |
ttgattaaggggttctatttctagtcttcctcttattcaattgtggttggatgctcttgatag |
15974991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 26387452 - 26387388
Alignment:
| Q |
199 |
ttggttggttgaggggttctgttcttagtcttactcttgttctattgtggttgggtgttcctgat |
263 |
Q |
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||||||| |||||||||| ||||||||||||| |||||||| ||||||||| ||||||||||| |
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| T |
26387452 |
ttggttgattgaggggttttgttcttagtcttcatcttgttcggttgtggttgagtgttcctgat |
26387388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 264
Target Start/End: Complemental strand, 7808180 - 7808020
Alignment:
| Q |
104 |
aaaacattatggtcacacatgtttcttctataagtggatcatgaatccattatgtattggtatcaatagtgtcttgtgacggatttctatagaagttggt |
203 |
Q |
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|||| |||||||||| ||||||| ||||||| |||||| |||||| |||||||| || | | | |||||||| |||||||||||| |||| |||||| |
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| T |
7808180 |
aaaatattatggtcatacatgttccttctatgagtggaccatgaacacattatgtcttagcaccgatagtgtcatgtgacggatttttatattggttggt |
7808081 |
T |
|
| Q |
204 |
tggttgaggggttctgttcttagtcttactcttgttctattgtggttgggtgttcctgata |
264 |
Q |
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|| ||||||||| ||||| |||||| ||||||||| | || ||||||||||| |||||| |
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| T |
7808080 |
tgactgaggggttatgttccgagtcttcctcttgttcgactgaggttgggtgttactgata |
7808020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 11524033 - 11523981
Alignment:
| Q |
244 |
tgtggttgggtgttcctgatagaagtgtagttagttttctggtatttgtttta |
296 |
Q |
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|||||||||||||| ||||||| ||||||||| |||||||||| ||||||||| |
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| T |
11524033 |
tgtggttgggtgtttctgataggagtgtagttggttttctggtgtttgtttta |
11523981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 256
Target Start/End: Original strand, 35509077 - 35509232
Alignment:
| Q |
102 |
ggaaaacattatggtcacacatgtttcttctataagt-ggatcatgaatccattatgtattggtatcaatagtgtcttgtgacggatttctatagaagtt |
200 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| ||| |||||||||| |||||||| || || ||||||||||||| ||||||| | || ||| |
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| T |
35509077 |
ggaaaacattgtggtcacacatgttccttctatgagtgggatcatgaactcattatgtgatgatactgatagtgtcttgtggcggatttgtttaagggtt |
35509176 |
T |
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| Q |
201 |
ggttggttgaggggttctgttcttagtcttactcttgttctattgtggttgggtgt |
256 |
Q |
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||||| |||| || ||||| ||||||| | ||||||||| ||||||||||||| |
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| T |
35509177 |
ggttgaccaagggattatgttcatagtcttccgcttgttctactgtggttgggtgt |
35509232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 25695876 - 25695797
Alignment:
| Q |
102 |
ggaaaacattatggtcacacatgtttcttctataagtggatcatgaatccattatgtattggtatcaatagtgtcttgtg |
181 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| ||||||||||||| |||||||| |||| | | |||||||||||| |
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| T |
25695876 |
ggaaaacattatggtcacacctgtaccttctatgagtggatcatgaactcattatgtgttggcaccgttagtgtcttgtg |
25695797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 23971891 - 23971948
Alignment:
| Q |
102 |
ggaaaacattatggtcacacatgtttcttctataagt-ggatcatgaatccattatgt |
158 |
Q |
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|||||||||||||||| ||| |||||||||||| ||| |||||||||| ||||||||| |
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| T |
23971891 |
ggaaaacattatggtcccacttgtttcttctatgagtgggatcatgaacccattatgt |
23971948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 21033432 - 21033486
Alignment:
| Q |
209 |
gaggggttctgttcttagtcttactcttgttctattgtggttgggtgttcctgat |
263 |
Q |
| |
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|||||||| ||||| ||||||| ||||||||| ||||||||| ||||||||||| |
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|
| T |
21033432 |
gaggggttttgttcctagtcttcctcttgttcggttgtggttgagtgttcctgat |
21033486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 214
Target Start/End: Complemental strand, 3582003 - 3581891
Alignment:
| Q |
102 |
ggaaaacattatggtcacacatgtttcttctataagt-ggatcatgaatccattatgtattggtatcaatagtgtcttgtgacggatttctatagaagtt |
200 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||| ||||| | ||| ||||||||||||| | | || ||||||||| ||||||| | || ||| |
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| T |
3582003 |
ggaaaacattatggtcacaaatgttccttctatgagtgggatcttaaat-cattatgtattggcaccgttaatgtcttgtggcggatttgtctacgggtt |
3581905 |
T |
|
| Q |
201 |
ggttggttgagggg |
214 |
Q |
| |
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||||| |||||||| |
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| T |
3581904 |
ggttgattgagggg |
3581891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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