View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16462_low_2 (Length: 716)

Name: NF16462_low_2
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16462_low_2
NF16462_low_2
[»] chr2 (13 HSPs)
chr2 (83-669)||(4975110-4975695)
chr2 (83-669)||(4993018-4993603)
chr2 (573-658)||(37559832-37559917)
chr2 (573-662)||(33533364-33533453)
chr2 (573-660)||(1269826-1269912)
chr2 (573-669)||(29997310-29997406)
chr2 (669-716)||(4975040-4975087)
chr2 (669-716)||(4992948-4992995)
chr2 (2-71)||(4976574-4976646)
chr2 (2-71)||(4994481-4994553)
chr2 (573-669)||(33788246-33788341)
chr2 (573-656)||(10173199-10173282)
chr2 (567-669)||(22884728-22884830)
[»] chr1 (10 HSPs)
chr1 (573-660)||(11439640-11439727)
chr1 (579-669)||(34775237-34775326)
chr1 (573-664)||(4431045-4431136)
chr1 (573-658)||(12636079-12636164)
chr1 (573-669)||(9312960-9313056)
chr1 (573-669)||(376427-376522)
chr1 (573-669)||(27102547-27102643)
chr1 (573-652)||(7451881-7451960)
chr1 (573-656)||(10785081-10785164)
chr1 (611-662)||(46768549-46768600)
[»] chr5 (9 HSPs)
chr5 (573-663)||(21391898-21391988)
chr5 (573-669)||(26405168-26405264)
chr5 (585-669)||(13953878-13953964)
chr5 (573-651)||(7391617-7391695)
chr5 (573-651)||(8297853-8297931)
chr5 (607-663)||(5187313-5187369)
chr5 (585-669)||(25992366-25992450)
chr5 (573-657)||(33109822-33109906)
chr5 (573-647)||(7194921-7194995)
[»] chr7 (6 HSPs)
chr7 (579-669)||(6726045-6726135)
chr7 (586-661)||(33719338-33719413)
chr7 (579-660)||(44755941-44756022)
chr7 (573-669)||(6716356-6716452)
chr7 (569-652)||(1321174-1321257)
chr7 (607-660)||(48058326-48058379)
[»] scaffold0119 (1 HSPs)
scaffold0119 (573-660)||(41790-41876)
[»] chr8 (5 HSPs)
chr8 (573-623)||(43312275-43312325)
chr8 (573-669)||(10248185-10248281)
chr8 (573-669)||(12197695-12197791)
chr8 (573-669)||(12442123-12442219)
chr8 (573-630)||(2613167-2613224)
[»] chr6 (5 HSPs)
chr6 (573-658)||(3880232-3880317)
chr6 (573-669)||(13423727-13423823)
chr6 (610-669)||(6860398-6860457)
chr6 (573-638)||(16180477-16180541)
chr6 (613-661)||(20701457-20701505)
[»] chr3 (7 HSPs)
chr3 (579-660)||(33143578-33143659)
chr3 (573-669)||(14280169-14280265)
chr3 (612-664)||(14754942-14754994)
chr3 (614-661)||(25648056-25648103)
chr3 (573-636)||(32010185-32010248)
chr3 (573-625)||(46358002-46358054)
chr3 (573-658)||(50518709-50518794)
[»] chr4 (5 HSPs)
chr4 (573-669)||(42719521-42719617)
chr4 (575-650)||(53823048-53823123)
chr4 (573-652)||(41117588-41117667)
chr4 (573-669)||(9262808-9262904)
chr4 (610-669)||(22810830-22810888)


Alignment Details
Target: chr2 (Bit Score: 487; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 83 - 669
Target Start/End: Complemental strand, 4975695 - 4975110
Alignment:
Q  83 gtagatgaaagagcaaacactatttaaaaacttgcgcacataaaagggagattttgagtttgaactcggttaactaaaatgttcagttaacaatttcggt 182  Q
    |||||||||||  ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  4975695 gtagatgaaaggacaaacactacttaaaaacttgcacacataaaagggagattttgagtttgaactcgattaactaaaatgttcagtttacaatttcggt 4975596  T
Q  183 attatcaattcagtcggactttatggacaattgtcgagnnnnnnnngaatattgcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttag 282  Q
    |||||||||| ||||||| |||||||||||||||||||        |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4975595 attatcaattgagtcggattttatggacaattgtcgagaaaaaaaagaatatagcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttag 4975496  T
Q  283 ttatttattcatcctgctcaacaataattgtattgtcttgatcttactctacctcctcagcatcagaatagatgtcttctaacttatgaataaatgtttg 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4975495 ttatttattcatcctgctcaacaataattgtattgtcttgatcttactctacctcctcagcatcagaatagatgtcttctaacttatgaataaatgtttg 4975396  T
Q  383 atataacttccttaaataaaatattaagcaagcagttgataaatcattaaacccataatctactctttcaacccttcggttattctctcttccttttagc 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4975395 atataacttccttaaataaaatattaagcaagcagttgataaatcattaaacccataatctactctttcaacccttcggttattctctcttccttttagt 4975296  T
Q  483 attttcttcaataatgcatagttttcaattgtgagattattttttgttagtaacttagtattactcaagaaatattactatattgatttcttttttaaac 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4975295 attttcttcaataatgcatagttttcaattgtgagattattttttgttagtaacttagtattactcaagaaatattactatattgattt-ttttttaaac 4975197  T
Q  583 aacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 669  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||   |||||| ||||||||||||||||||||| ||| ||||    
T  4975196 aacaaattttatttaaccatcaggtctctgctcaagacgaacagagactagtgaaactaagaatacaaactaaaggcgtcgtatata 4975110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 83 - 669
Target Start/End: Complemental strand, 4993603 - 4993018
Alignment:
Q  83 gtagatgaaagagcaaacactatttaaaaacttgcgcacataaaagggagattttgagtttgaactcggttaactaaaatgttcagttaacaatttcggt 182  Q
    |||||||||||  ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  4993603 gtagatgaaaggacaaacactacttaaaaacttgcacacataaaagggagattttgagtttgaactcgattaactaaaatgttcagtttacaatttcggt 4993504  T
Q  183 attatcaattcagtcggactttatggacaattgtcgagnnnnnnnngaatattgcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttag 282  Q
    |||||||||| ||||||| |||||||||||||||||||        |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4993503 attatcaattgagtcggattttatggacaattgtcgagaaaaaaaagaatatagcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttag 4993404  T
Q  283 ttatttattcatcctgctcaacaataattgtattgtcttgatcttactctacctcctcagcatcagaatagatgtcttctaacttatgaataaatgtttg 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4993403 ttatttattcatcctgctcaacaataattgtattgtcttgatcttactctacctcctcagcatcagaatagatgtcttctaacttatgaataaatgtttg 4993304  T
Q  383 atataacttccttaaataaaatattaagcaagcagttgataaatcattaaacccataatctactctttcaacccttcggttattctctcttccttttagc 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4993303 atataacttccttaaataaaatattaagcaagcagttgataaatcattaaacccataatctactctttcaacccttcggttattctctcttccttttagt 4993204  T
Q  483 attttcttcaataatgcatagttttcaattgtgagattattttttgttagtaacttagtattactcaagaaatattactatattgatttcttttttaaac 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4993203 attttcttcaataatgcatagttttcaattgtgagattattttttgttagtaacttagtattactcaagaaatattactatattgattt-ttttttaaac 4993105  T
Q  583 aacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 669  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||   |||||| ||||||||||||||||||||| ||| ||||    
T  4993104 aacaaattttatttaaccatcaggtctctgctcaagacgaacagagactagtgaaactaagaatacaaactaaaggcgtcgtatata 4993018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 573 - 658
Target Start/End: Complemental strand, 37559917 - 37559832
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaagg 658  Q
    ||||||||||||||||||||||||||  || || || ||| | |||||||||| |||||||||||||| |||||||||||||||||    
T  37559917 ttttttaaacaacaaattttatttaaaaatgagatccctgtttaagacgaacagagatcggtgaaattgagaatacaaactaaagg 37559832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 573 - 662
Target Start/End: Original strand, 33533364 - 33533453
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgcc 662  Q
    ||||| |||||||||||||||||||||   ||| ||||||||||||||||||| |||  ||||||| |||| |||||||| |||||||||    
T  33533364 tttttgaaacaacaaattttatttaacagccagatctctgctcaagacgaacagagactggtgaaactaaggatacaaacaaaaggcgcc 33533453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 573 - 660
Target Start/End: Complemental strand, 1269912 - 1269826
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcg 660  Q
    ||||||||||||||||||||||||||| ||||  |||||| |||||||||| | ||  |||||||||| |||||||||| ||||||||    
T  1269912 ttttttaaacaacaaattttatttaacaatcaaatctctgttcaagacgaa-agaggccggtgaaattgagaatacaaattaaaggcg 1269826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 573 - 669
Target Start/End: Complemental strand, 29997406 - 29997310
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 669  Q
    ||||||||||||||||||||||| ||| ||| |||||||| | |||||||||| ||| || ||||||| | |||| |||| |||||| |||| ||||    
T  29997406 ttttttaaacaacaaattttattaaacaatctggtctctggtaaagacgaacagagaccgatgaaattgaaaataaaaacaaaaggcaccgtatata 29997310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 669 - 716
Target Start/End: Complemental strand, 4975087 - 4975040
Alignment:
Q  669 accctgaaaaacatccttgaggacaacccccaccaaattacacaccac 716  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  4975087 accctgaaaaacatccttgaggataacacccaccaaattacacaccac 4975040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 669 - 716
Target Start/End: Complemental strand, 4992995 - 4992948
Alignment:
Q  669 accctgaaaaacatccttgaggacaacccccaccaaattacacaccac 716  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  4992995 accctgaaaaacatccttgaggataacacccaccaaattacacaccac 4992948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 4976646 - 4976574
Alignment:
Q  2 attttagtagatcgctttaattttaacatattca-cccgatactaa--atatgataagtgttttgaaaaaaca 71  Q
    |||||||||||||||| ||||||||||||| ||| | |||||  ||  |||||||||||||||||||||||||    
T  4976646 attttagtagatcgctgtaattttaacatactcatcgcgatatcaaatatatgataagtgttttgaaaaaaca 4976574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 4994553 - 4994481
Alignment:
Q  2 attttagtagatcgctttaattttaacatattca-cccgatactaa--atatgataagtgttttgaaaaaaca 71  Q
    |||||||||||||||| ||||||||||||| ||| | |||||  ||  |||||||||||||||||||||||||    
T  4994553 attttagtagatcgctgtaattttaacatactcatcgcgatatcaaatatatgataagtgttttgaaaaaaca 4994481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 669
Target Start/End: Original strand, 33788246 - 33788341
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 669  Q
    |||||| |||| ||||||||||||||  | ||  |||||||| |||||||||| ||| |||||| |   ||||||||||||||||||||||| ||||    
T  33788246 ttttttgaacagcaaattttatttaaa-accaaatctctgctaaagacgaacagagaccggtgataccgagaatacaaactaaaggcgccgtatata 33788341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 656
Target Start/End: Original strand, 10173199 - 10173282
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaa 656  Q
    ||||| ||||| ||||||||| ||||| | ||| |  |||||||||||||||| ||||||||||||   | |||||||||||||    
T  10173199 tttttgaaacatcaaattttacttaacaaccagattcctgctcaagacgaacagagatcggtgaaacatataatacaaactaaa 10173282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 567 - 669
Target Start/End: Original strand, 22884728 - 22884830
Alignment:
Q  567 gatttcttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgt 666  Q
    ||||| |||||| | || ||||||||||||||  | ||  ||||||||||||||||||| ||| ||  || ||  ||||||||||||||||||| ||| |    
T  22884728 gatttattttttgagcatcaaattttatttaaaaaccaaatctctgctcaagacgaacaaagaccgacgatatagagaatacaaactaaaggcgtcgtat 22884827  T
Q  667 ata 669  Q
    |||    
T  22884828 ata 22884830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 8e-23; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 573 - 660
Target Start/End: Original strand, 11439640 - 11439727
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcg 660  Q
    ||||||||||||||||||||||| ||| | ||| ||||||||||||||||||| |||||||||||| | ||||||||||| |||||||    
T  11439640 ttttttaaacaacaaattttattaaacaaccagatctctgctcaagacgaacaaagatcggtgaaaatgagaatacaaacaaaaggcg 11439727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 579 - 669
Target Start/End: Complemental strand, 34775326 - 34775237
Alignment:
Q  579 aaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 669  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||| ||| || | ||  | ||||||||||||||||||||||| ||||    
T  34775326 aaacaacaaattttatttaatcatcaggtc-ctgctcaagacgaacaaagaccgataaagctgagaatacaaactaaaggcgccgtatata 34775237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 573 - 664
Target Start/End: Complemental strand, 4431136 - 4431045
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgt 664  Q
    ||||| ||||| ||||||||||| ||| | ||  ||||||||||||||||| | ||| |||||||||| ||||||||||| |||||||||||    
T  4431136 tttttgaaacagcaaattttattaaacaaacatatctctgctcaagacgaatagagaccggtgaaattgagaatacaaacaaaaggcgccgt 4431045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 573 - 658
Target Start/End: Original strand, 12636079 - 12636164
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaagg 658  Q
    ||||||||||||||||||||||||||| ||| |||| || ||||||||||||| ||| |||| ||| | | ||||||| |||||||    
T  12636079 ttttttaaacaacaaattttatttaactatcgggtccctactcaagacgaacagagaccggtaaaactgataatacaacctaaagg 12636164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 573 - 669
Target Start/End: Original strand, 9312960 - 9313056
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 669  Q
    ||||||||||||||||||||||| ||| |  || ||||||||||||||||||| ||| |||||||| | | ||||||| | ||||||| ||| ||||    
T  9312960 ttttttaaacaacaaattttattaaacaacgagatctctgctcaagacgaacagagaccggtgaaacttataatacaatcaaaaggcgtcgtatata 9313056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 573 - 669
Target Start/End: Original strand, 376427 - 376522
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 669  Q
    ||||||||||| ||||||||||| ||||| || ||| |||||||||||||||| |||  | |||||   |||||||||| |||||||||||| ||||    
T  376427 ttttttaaacagcaaattttatt-aaccaccacgtccctgctcaagacgaacagagacggatgaaacagagaatacaaagtaaaggcgccgtatata 376522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 573 - 669
Target Start/End: Complemental strand, 27102643 - 27102547
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 669  Q
    ||||||||||| ||||||||||| ||| | ||| |||||| |||||||||||| |||  ||||||  | ||||||||||| ||||| ||||| ||||    
T  27102643 ttttttaaacagcaaattttattaaacaaccagatctctgttcaagacgaacaaagactggtgaacctgagaatacaaacaaaaggtgccgtatata 27102547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 573 - 652
Target Start/End: Original strand, 7451881 - 7451960
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaac 652  Q
    ||||||||||| ||||| ||||| ||| |  || ||||||||||||||||||| ||| |||||||| | |||||||||||    
T  7451881 ttttttaaacagcaaatattattaaacaactagatctctgctcaagacgaacagagaccggtgaaactgagaatacaaac 7451960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 656
Target Start/End: Original strand, 10785081 - 10785164
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaa 656  Q
    ||||||||||| ||||||| ||||||| | ||| || |||||||||||||| | |||  ||| ||| | |||||||||||||||    
T  10785081 ttttttaaacatcaaatttcatttaacaaccagatccctgctcaagacgaatagagacgggtaaaactgagaatacaaactaaa 10785164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 662
Target Start/End: Complemental strand, 46768600 - 46768549
Alignment:
Q  611 tgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgcc 662  Q
    ||||||||||||||| |||| ||||||||| || |||||||| |||||||||    
T  46768600 tgctcaagacgaacagagattggtgaaattgagcatacaaacaaaaggcgcc 46768549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 8e-20; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 573 - 663
Target Start/End: Original strand, 21391898 - 21391988
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccg 663  Q
    ||||| |||||||||||||||||||  | ||||||| |||||||||||||||| ||| |||||||| | ||||||||||||||||| ||||    
T  21391898 tttttgaaacaacaaattttatttattcttcaggtccctgctcaagacgaacaaagaccggtgaaactgagaatacaaactaaaggtgccg 21391988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 573 - 669
Target Start/End: Original strand, 26405168 - 26405264
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 669  Q
    |||||| |||||||||||||||| ||| | ||| | ||||||||||||||||| ||| |||||||| | ||||||||||| ||||||| ||| ||||    
T  26405168 tttttttaacaacaaattttattaaacaaccagatttctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaggcgtcgtatata 26405264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 585 - 669
Target Start/End: Original strand, 13953878 - 13953964
Alignment:
Q  585 caaattttatttaaccatcaggtctctgctcaagacgaacatagatcg--gtgaaattaagaatacaaactaaaggcgccgtgtata 669  Q
    ||||||||||||||||  ||||||||||||||||||||||| ||| ||  |||||| | ||| ||||||||||||||||||| ||||    
T  13953878 caaattttatttaacctccaggtctctgctcaagacgaacagagaccggtgtgaaactgagagtacaaactaaaggcgccgtatata 13953964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 573 - 651
Target Start/End: Original strand, 7391617 - 7391695
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaa 651  Q
    |||||||| |||||||||||||| || |||||| |||||| |||||||||||| ||| |||||||| | ||||||||||    
T  7391617 ttttttaatcaacaaattttattaaatcatcagatctctgttcaagacgaacagagaccggtgaaaatgagaatacaaa 7391695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 573 - 651
Target Start/End: Complemental strand, 8297931 - 8297853
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaa 651  Q
    |||||| |||| ||||||||||| ||| ||||| ||||| ||||||||||||| ||| |||||||| | ||||||||||    
T  8297931 tttttttaacagcaaattttattgaacaatcagatctctactcaagacgaacagagaccggtgaaactgagaatacaaa 8297853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 607 - 663
Target Start/End: Complemental strand, 5187369 - 5187313
Alignment:
Q  607 tctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccg 663  Q
    ||||||||||||| || || |||||||||||||| ||||||||||| ||||||||||    
T  5187369 tctctgctcaagaagagcagagatcggtgaaattgagaatacaaacaaaaggcgccg 5187313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 585 - 669
Target Start/End: Complemental strand, 25992450 - 25992366
Alignment:
Q  585 caaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 669  Q
    ||||| ||||| ||| | ||| ||||||||||||||||||| ||| |||||||| | | ||||||||| ||||||||||| ||||    
T  25992450 caaatattattaaacaaccagatctctgctcaagacgaacagagaccggtgaaaatgataatacaaacaaaaggcgccgtatata 25992366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 657
Target Start/End: Original strand, 33109822 - 33109906
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaag 657  Q
    |||||| |||| ||||| ||||| ||| ||||  |||||||| |||||||||||| || ||||||| | ||||||||||| ||||    
T  33109822 tttttttaacagcaaatattattaaacaatcaaatctctgcttaagacgaacataaattggtgaaactgagaatacaaacaaaag 33109906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 573 - 647
Target Start/End: Original strand, 7194921 - 7194995
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaata 647  Q
    ||||||||||| ||||||||||| ||| | ||| || || ||||||||||||| |||||| ||||| | ||||||    
T  7194921 ttttttaaacagcaaattttattaaacaaccagatccctactcaagacgaacaaagatcgatgaaactgagaata 7194995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 579 - 669
Target Start/End: Original strand, 6726045 - 6726135
Alignment:
Q  579 aaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 669  Q
    ||||||||||||||||| ||| | ||| ||||||||||||||||||| |||||||||||| | ||||||||||| |||  |||||| ||||    
T  6726045 aaacaacaaattttattaaacaaccagatctctgctcaagacgaacagagatcggtgaaactgagaatacaaacaaaaaacgccgtatata 6726135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 586 - 661
Target Start/End: Complemental strand, 33719413 - 33719338
Alignment:
Q  586 aaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgc 661  Q
    |||||||||| ||| | ||| || |||||||||||||||| |||||||||||| | ||||||||||| || |||||    
T  33719413 aaattttattaaacaaccagatccctgctcaagacgaacagagatcggtgaaactgagaatacaaacaaacggcgc 33719338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 579 - 660
Target Start/End: Complemental strand, 44756022 - 44755941
Alignment:
Q  579 aaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcg 660  Q
    ||||||||||||||||| ||| |  || || |||||||||||||||  ||||| |||||| |||| |||||||| |||||||    
T  44756022 aaacaacaaattttattaaacaactagatccctgctcaagacgaacgaagatcagtgaaactaagcatacaaacaaaaggcg 44755941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 669
Target Start/End: Original strand, 6716356 - 6716452
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 669  Q
    ||||||||||| ||||||||||||||||| || ||| ||||||||||| |||  |||  | |||||   |||||||||| |||||| ||||| ||||    
T  6716356 ttttttaaacatcaaattttatttaaccaccaagtccctgctcaagacaaaccgagacagatgaaacagagaatacaaattaaaggggccgtatata 6716452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 652
Target Start/End: Complemental strand, 1321257 - 1321174
Alignment:
Q  569 tttcttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaac 652  Q
    ||||||| | ||||||||||||||||| ||| | ||  ||||| ||||||||||||  |||||| ||||| | |||||||||||    
T  1321257 tttctttctgaaacaacaaattttattaaacaaccacatctctactcaagacgaacggagatcgatgaaactgagaatacaaac 1321174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 660
Target Start/End: Original strand, 48058326 - 48058379
Alignment:
Q  607 tctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcg 660  Q
    |||||||||||||| |||| ||| |||||||||  ||||||||||| |||||||    
T  48058326 tctctgctcaagacaaacagagaccggtgaaatagagaatacaaacgaaaggcg 48058379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 573 - 660
Target Start/End: Original strand, 41790 - 41876
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcg 660  Q
    ||||||||||||||||||||||||||| ||||  |||||| |||||||||| | ||  |||||||||| |||||||||| ||||||||    
T  41790 ttttttaaacaacaaattttatttaacaatcaaatctctgttcaagacgaa-agaggccggtgaaattgagaatacaaattaaaggcg 41876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 573 - 623
Target Start/End: Original strand, 43312275 - 43312325
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaa 623  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  43312275 ttttttaaacaacaaattttatttaaccacctggtctctgctcaagacgaa 43312325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 573 - 669
Target Start/End: Original strand, 10248185 - 10248281
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 669  Q
    ||||| ||||||||||||||||||||||||||||||   |||||||||||||  | |||  ||||| | ||||||||| ||||||||| ||| ||||    
T  10248185 tttttgaaacaacaaattttatttaaccatcaggtccgggctcaagacgaactgaaatcattgaaactgagaatacaacctaaaggcgtcgtatata 10248281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 669
Target Start/End: Original strand, 12197695 - 12197791
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 669  Q
    |||||| ||||  |||||||||||||| |  || ||| ||||||||||||| | |||||||||||    ||||||||||||||||||| ||| ||||    
T  12197695 tttttttaacagtaaattttatttaacaacgagatctatgctcaagacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctata 12197791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 669
Target Start/End: Original strand, 12442123 - 12442219
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 669  Q
    |||||| ||||  |||||||||||||| |  || ||| ||||||||||||| | |||||||||||    ||||||||||||||||||| ||| ||||    
T  12442123 tttttttaacagtaaattttatttaacaacgagatctatgctcaagacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctata 12442219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 630
Target Start/End: Original strand, 2613167 - 2613224
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagat 630  Q
    ||||| ||||| ||||||||||||||| ||||| || || ||||||||||| ||||||    
T  2613167 tttttcaaacagcaaattttatttaacaatcagatccctactcaagacgaatatagat 2613224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 573 - 658
Target Start/End: Original strand, 3880232 - 3880317
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaagg 658  Q
    |||||| |||||||||||||||| ||| ||||| || |||||||||||||||| ||| |||||||| | | ||||||||| |||||    
T  3880232 tttttttaacaacaaattttattaaacaatcagatccctgctcaagacgaacagagaccggtgaaactgaaaatacaaacaaaagg 3880317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 573 - 669
Target Start/End: Complemental strand, 13423823 - 13423727
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 669  Q
    ||||| ||||| |||||||||||||||||| ||||| || ||||||||||||| ||| |  ||||| | ||||||||| ||||||||| ||| ||||    
T  13423823 tttttgaaacagcaaattttatttaaccattaggtccctcctcaagacgaacagagacctttgaaactgagaatacaatctaaaggcgtcgtatata 13423727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 610 - 669
Target Start/End: Complemental strand, 6860457 - 6860398
Alignment:
Q  610 ctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 669  Q
    |||||||||| ||| |||||||||||||| ||||||||||||| |||| |||||| ||||    
T  6860457 ctgctcaagatgaatatagatcggtgaaactaagaatacaaacaaaagacgccgtatata 6860398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 573 - 638
Target Start/End: Original strand, 16180477 - 16180541
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaa 638  Q
    |||||||| || ||||||||||| ||  ||||| ||||||||||||||||||| ||||||||||||    
T  16180477 ttttttaatcagcaaattttattaaaa-atcagatctctgctcaagacgaacaaagatcggtgaaa 16180541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 613 - 661
Target Start/End: Original strand, 20701457 - 20701505
Alignment:
Q  613 ctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgc 661  Q
    ||||||||||||| |||||||||||| | ||||||||||| ||||||||    
T  20701457 ctcaagacgaacagagatcggtgaaactgagaatacaaacaaaaggcgc 20701505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 579 - 660
Target Start/End: Original strand, 33143578 - 33143659
Alignment:
Q  579 aaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcg 660  Q
    ||||||||||||||||| ||| | ||| |||||||||||| |||||||| |||||||||| | ||||||||| | |||||||    
T  33143578 aaacaacaaattttattaaacaaccagatctctgctcaaggcgaacataaatcggtgaaactgagaatacaaccaaaaggcg 33143659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 573 - 669
Target Start/End: Original strand, 14280169 - 14280265
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 669  Q
    ||||| |||||  |||| ||||| ||| ||||| ||| ||||||||||||||| |||||| ||||| | | |||||||| |||||||||||| ||||    
T  14280169 tttttgaaacagtaaatattattaaacaatcagatctttgctcaagacgaacaaagatcgatgaaactgataatacaaattaaaggcgccgtatata 14280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 612 - 664
Target Start/End: Original strand, 14754942 - 14754994
Alignment:
Q  612 gctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgt 664  Q
    |||||||||||||| | ||| |||||||| |||||||||||||||||||||||    
T  14754942 gctcaagacgaacaaatatcagtgaaattgagaatacaaactaaaggcgccgt 14754994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 614 - 661
Target Start/End: Complemental strand, 25648103 - 25648056
Alignment:
Q  614 tcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgc 661  Q
    |||||||||||| |||||||||||| ||||||||||||| ||||||||    
T  25648103 tcaagacgaacagagatcggtgaaactaagaatacaaacaaaaggcgc 25648056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 573 - 636
Target Start/End: Complemental strand, 32010248 - 32010185
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtga 636  Q
    ||||| ||||||||||||||||||||| | ||| || || ||||||||||||| ||||||||||    
T  32010248 tttttgaaacaacaaattttatttaacaaccagatccctactcaagacgaacagagatcggtga 32010185  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 625
Target Start/End: Original strand, 46358002 - 46358054
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaaca 625  Q
    ||||| ||||||||||||||||||||| | ||| || ||||||||||||||||    
T  46358002 tttttgaaacaacaaattttatttaacaaccagatccctgctcaagacgaaca 46358054  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 658
Target Start/End: Original strand, 50518709 - 50518794
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaagg 658  Q
    ||||| ||||| ||||||||||| ||| ||  | || |||||||||||||||| |||  ||||||| | ||||||||||| |||||    
T  50518709 tttttgaaacatcaaattttattaaacaatttgatccctgctcaagacgaacagagactggtgaaactgagaatacaaacaaaagg 50518794  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 573 - 669
Target Start/End: Complemental strand, 42719617 - 42719521
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 669  Q
    |||||||| |||||||||||||| ||| ||||  || |||||||||||||| | ||| |||||||| | ||||||||||| |||| |||||| ||||    
T  42719617 ttttttaagcaacaaattttattaaacaatcaaatccctgctcaagacgaatagagaccggtgaaactgagaatacaaacaaaagacgccgtatata 42719521  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 575 - 650
Target Start/End: Original strand, 53823048 - 53823123
Alignment:
Q  575 ttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaa 650  Q
    |||||||||||| |||||||||||||| || |||  ||||||| ||||||| |||||||| ||||| |||||||||    
T  53823048 ttttaaacaacatattttatttaaccaccatgtcaatgctcaaaacgaacagagatcggtaaaattgagaatacaa 53823123  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 573 - 652
Target Start/End: Original strand, 41117588 - 41117667
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaac 652  Q
    ||||| ||||||||||||||||| ||| |  || ||||||||||||||||||| |||  ||||||||| ||| |||||||    
T  41117588 tttttgaaacaacaaattttattaaacaactagatctctgctcaagacgaacagagacaggtgaaattgagactacaaac 41117667  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 669
Target Start/End: Complemental strand, 9262904 - 9262808
Alignment:
Q  573 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 669  Q
    ||||| ||||| ||||||||||| ||| | ||  || | |||||||||||||| ||| || ||||| | ||||||||||| ||||||||||| ||||    
T  9262904 tttttaaaacagcaaattttattaaacaaccaaatccccgctcaagacgaacaaagaccgatgaaactgagaatacaaacaaaaggcgccgtatata 9262808  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 669
Target Start/End: Original strand, 22810830 - 22810888
Alignment:
Q  610 ctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 669  Q
    |||||||||||||||| |||  ||||||||| ||||||||||| ||||||||||| ||||    
T  22810830 ctgctcaagacgaacagagactggtgaaattgagaatacaaac-aaaggcgccgtatata 22810888  T

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