View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16462_low_20 (Length: 288)
Name: NF16462_low_20
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16462_low_20 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 32206914 - 32206627
Alignment:
| Q |
1 |
ttgttgtgaatacaattatgtgtacatctccacagcatggccaaagaccatctactgcattcaacagtcctgaaagtgtcacctgttgcaattttgaaac |
100 |
Q |
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| T |
32206914 |
ttgttgtgaatacaattatgtgttcttctccacagcatgaccaaagaccatctactgcattcaacagtcctgaaagtgtcacctgttgaaattttgaaac |
32206815 |
T |
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| Q |
101 |
aaacattttagttttccaatnnnnnnncatttgacatgaacagaagaatatgacgccattcgattcaagtagtctttcatcttactaacaagcttacagt |
200 |
Q |
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| T |
32206814 |
aaacattttagttttccaataaaaaaacatttgacatgaacagaagaatatgacgccattcgattcaagtagtctttcatcttactaacaaccttacagt |
32206715 |
T |
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| Q |
201 |
aannnnnnnatacatgaaactttacaagagttacagtatagtgacacgttatcataacacaggtaagtaatcattctgaacctatgct |
288 |
Q |
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| T |
32206714 |
aatttttttatacatgaaactttacaagagttgcattatagagactcgttatgataaaacaggtaagtaagcattctgaacctatgct |
32206627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 32156730 - 32156817
Alignment:
| Q |
1 |
ttgttgtgaatacaattatgtgtacatctccacagcatggccaaagaccatctactgcattcaacagtcctgaaagtgtcacctgttg |
88 |
Q |
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| T |
32156730 |
ttgttgtgaaaacaattatgtgttcttctccacagcatgaccaaagaccatctactgcattcaatagtcctgaaagtgtcacctgttg |
32156817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 32174506 - 32174593
Alignment:
| Q |
1 |
ttgttgtgaatacaattatgtgtacatctccacagcatggccaaagaccatctactgcattcaacagtcctgaaagtgtcacctgttg |
88 |
Q |
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| T |
32174506 |
ttgttgtgaatacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctgaaagtgtcacctgttg |
32174593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 32110546 - 32110633
Alignment:
| Q |
1 |
ttgttgtgaatacaattatgtgtacatctccacagcatggccaaagaccatctactgcattcaacagtcctgaaagtgtcacctgttg |
88 |
Q |
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| T |
32110546 |
ttgttgtgaaaacaattatgtgttcttctccacagcatgaccaaagaccatctactgcattcaatagtcctgaaagtgtcatctgttg |
32110633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 32118810 - 32118897
Alignment:
| Q |
1 |
ttgttgtgaatacaattatgtgtacatctccacagcatggccaaagaccatctactgcattcaacagtcctgaaagtgtcacctgttg |
88 |
Q |
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| T |
32118810 |
ttgttgtgaatacaattatgtgttcttctccgcagcatgaccaaagaccatcaacagcattcaatagtcctgaaagtgtcacctgttg |
32118897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 32182592 - 32182679
Alignment:
| Q |
1 |
ttgttgtgaatacaattatgtgtacatctccacagcatggccaaagaccatctactgcattcaacagtcctgaaagtgtcacctgttg |
88 |
Q |
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| T |
32182592 |
ttgttgtgaaaacaattatgtgttcctctccacaacatgaccaaagaccatctgtcgcattcaatagtcctgaaagtgtcacctgttg |
32182679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 32211989 - 32211904
Alignment:
| Q |
1 |
ttgttgtgaatacaattatgtgtacatctccacagcatggccaaagaccatctactgcattcaacagtcctgaaagtgtcacctgt |
86 |
Q |
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| T |
32211989 |
ttgttgtgacaacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcccgaaagtgtcatctgt |
32211904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 32157840 - 32157925
Alignment:
| Q |
1 |
ttgttgtgaatacaattatgtgtacatctccacagcatggccaaagaccatctactgcattcaacagtcctgaaagtgtcacctgt |
86 |
Q |
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| T |
32157840 |
ttgttgtgaaaacaattatgtgttcttctccacagcacgaccagagaccatctgtcgcattcaatagtcccgaaagtgtcatctgt |
32157925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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