View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16462_low_23 (Length: 254)
Name: NF16462_low_23
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16462_low_23 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 114 - 254
Target Start/End: Complemental strand, 2230893 - 2230753
Alignment:
| Q |
114 |
cttgaaagatctgcatgcaggtttaaattaaatagaataaaaccaaataacaatcctcacctagaagagtatggacatattcagaatcctgtgaaacatc |
213 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2230893 |
cttgaaagatctgcatacagctttaaattaaatagaataaaaccaaataacaattctcacctagaagagtatggacatggtcagaatcctgtgaaacatc |
2230794 |
T |
|
| Q |
214 |
aaacagaggaccagctccaaaggcataggataatgaatcat |
254 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
2230793 |
aaacagaggaccagctccaagggcataggatagtgagtcat |
2230753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 54224972 - 54224877
Alignment:
| Q |
11 |
atcatcaactcattgatgggggaaccaaaagagatattaaggaagcgctttccatcgactccaaacaagaagtcctgaagtggtaacccatatcca |
106 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
54224972 |
atcaccaactcattaatgggggaaccaaaagagatattaaggaagcgctttccatcgactccaaacaagaagtcctgaagtggcaacccatatcca |
54224877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 115 - 254
Target Start/End: Original strand, 28135719 - 28135858
Alignment:
| Q |
115 |
ttgaaagatctgcatgcaggtttaaattaaatagaataaaaccaaataacaatcctcacctagaagagtatggacatattcagaatcctgtgaaacatca |
214 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||| | || |||||||||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
28135719 |
ttgaaagatctgcatacagctttaaattaaatagaataaaaccaaatagcgattctcacctagaagagtatgaacatagtcagaatcctgtgacacatca |
28135818 |
T |
|
| Q |
215 |
aacagaggaccagctccaaaggcataggataatgaatcat |
254 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
28135819 |
aacagaggaccagctccaagggcataggatagtgagtcat |
28135858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 137 - 254
Target Start/End: Complemental strand, 44807101 - 44806984
Alignment:
| Q |
137 |
taaattaaatagaataaaaccaaataacaatcctcacctagaagagtatggacatattcagaatcctgtgaaacatcaaacagaggaccagctccaaagg |
236 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
44807101 |
taaattaaatagaataaaaataaataacaattctcacctagaagagtatggacatagtcagaatcctgtgaaacatcaaacaggggaccagctccaaggg |
44807002 |
T |
|
| Q |
237 |
cataggataatgaatcat |
254 |
Q |
| |
|
||||||||| ||| |||| |
|
|
| T |
44807001 |
cataggatagtgagtcat |
44806984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University