View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16462_low_24 (Length: 250)
Name: NF16462_low_24
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16462_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 52998879 - 52999111
Alignment:
| Q |
1 |
ccccaatttctacacgagtcattctcacattggtagcttagattatacatcacaacacggtcccctatatttattttccccaattttttattttgtctaa |
100 |
Q |
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| T |
52998879 |
ccccaatttctacacgagtcattctcacattggtagcttagattatacatcacaacacggtcccctatatttattttccccaattttttattttgtctaa |
52998978 |
T |
|
| Q |
101 |
attacatatgataccatatagggtcgttacagttttcaaatgtggagccaggtttgtgtacattttcaataaccactaaaaaaggtaagttgaccaaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52998979 |
attacatatgataccatatagggtcgttacagttttcaaatgtggagccgggtttgtgtacattttcaataaccactaaaaaaggtaagttgaccaaaac |
52999078 |
T |
|
| Q |
201 |
atagtattcaacattgttgctaatctagctgag |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
52999079 |
atagtattcaacattgttgctaatctagctgag |
52999111 |
T |
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