View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16462_low_25 (Length: 247)
Name: NF16462_low_25
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16462_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 52270151 - 52270372
Alignment:
| Q |
18 |
catatttgttctgtgtatttctttggaatttggtagaaacaactttgggtgcttgactctcccttataatctgagttacaaccaaacagagaaaccagca |
117 |
Q |
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| T |
52270151 |
catatttgttctgagtatttctttggaatttggtagaaacaactttgggtgcttgactctcccttataatctgagttacaaccaaacagagaaaccagca |
52270250 |
T |
|
| Q |
118 |
gtcagtatgacagtagaatataaatgacgtaaacaatattgcatatttaaatagcatttacaaaaggagaggtcgatttgaataagcatgtttgttacca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52270251 |
gtcagtatgacagtagaatataaatgacgtaaacaatattgcatatttaaatagcatttacaaaaggagaggtcgattccaataagcatgtttgttacca |
52270350 |
T |
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| Q |
218 |
tcacagttctagtagtattatc |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
52270351 |
tcacagttctagtagtattatc |
52270372 |
T |
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