View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16462_low_28 (Length: 233)

Name: NF16462_low_28
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16462_low_28
NF16462_low_28
[»] chr2 (3 HSPs)
chr2 (14-218)||(13448576-13448780)
chr2 (12-218)||(13440413-13440619)
chr2 (14-218)||(13455047-13455251)
[»] chr7 (1 HSPs)
chr7 (20-218)||(3417295-3417493)
[»] chr5 (2 HSPs)
chr5 (45-218)||(28385547-28385720)
chr5 (12-218)||(12540898-12541104)
[»] scaffold0536 (2 HSPs)
scaffold0536 (81-218)||(6337-6474)
scaffold0536 (85-212)||(10323-10450)
[»] chr4 (4 HSPs)
chr4 (81-215)||(48958363-48958497)
chr4 (157-218)||(48974322-48974383)
chr4 (119-204)||(48912209-48912294)
chr4 (158-211)||(48961516-48961569)
[»] chr6 (2 HSPs)
chr6 (12-218)||(12589926-12590132)
chr6 (85-218)||(12483294-12483427)
[»] chr8 (1 HSPs)
chr8 (59-218)||(12641285-12641444)


Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 13448780 - 13448576
Alignment:
Q  14 cagagaggggaaatgagggtgctgcgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcat 113  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448780 cagagaggggaaatgagggtgctgtgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcat 13448681  T
Q  114 caactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctgagaagaaagggaaagaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448680 caactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctgagaagaaagggaaagaa 13448581  T
Q  214 gatga 218  Q
    |||||    
T  13448580 gatga 13448576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 13440619 - 13440413
Alignment:
Q  12 agcagagaggggaaatgagggtgctgcgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagc 111  Q
    ||||||||||||||| ||||||| || |||  |||||||  || ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  13440619 agcagagaggggaaaggagggtgatgtgaacatgcacgaatgcatgagttggctcgactcagagaaagttaactcggtgttgtacatatgttttggaagc 13440520  T
Q  112 atcaactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctgagaagaaagggaaag 211  Q
    ||||||||||| ||||||||||||||||| |||||||| || || |||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  13440519 atcaactatttctctgataaacaactatatgagatggcgtgcgcaatagaagcatctagtcacccattcatatgggttgttcctgagaagaaagggaaag 13440420  T
Q  212 aagatga 218  Q
    |||||||    
T  13440419 aagatga 13440413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 13455251 - 13455047
Alignment:
Q  14 cagagaggggaaatgagggtgctgcgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcat 113  Q
    ||||||||||||| |||| |  || |||||| |||||| ||||||| ||||| || ||| |||||||||||||||| |||||||||||||||||||||||    
T  13455251 cagagaggggaaacgaggtttttgtgaatgtacacgagtgcctgagctggcttgactcaaagagagttaactcagtattgtacatatgttttggaagcat 13455152  T
Q  114 caactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctgagaagaaagggaaagaa 213  Q
    ||| ||||  ||| ||||||||||||| |||||||||||  |  |||||||| | ||||| || ||||||||||||||||| ||||||||||||||||||    
T  13455151 caattattcatctaataaacaactatatgagatggcatgctcactagaagcagcaggtcaaccgttcatatgggttgttccggagaagaaagggaaagaa 13455052  T
Q  214 gatga 218  Q
    |||||    
T  13455051 gatga 13455047  T

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Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 3417295 - 3417493
Alignment:
Q  20 ggggaaatgagggtgctgcgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcatcaacta 119  Q
    ||||||| |||||||||| || || ||| ||| ||||| |||||||| | ||| |   |||||||||||||||||||||||||||||||||| | |||||    
T  3417295 ggggaaacgagggtgctgagagtgagcatgagtgcctgcgttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttaaacta 3417394  T
Q  120 tttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctgagaagaaagggaaagaagatga 218  Q
    ||| ||||||||||||||||| ||||| ||||  || ||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  3417395 tttctctgataaacaactatatgagattgcatacgcaatagaagcatcgggtcacccattcatatgggttgttcttgagaagaaaggaaaagaagatga 3417493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 45 - 218
Target Start/End: Complemental strand, 28385720 - 28385547
Alignment:
Q  45 gcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcatcaactatttttctgataaacaactatacgag 144  Q
    ||||||| ||||||  |||||| | ||| || |||||||||||||  |||||||||||||||||||||| ||| |||| ||||||||||||||||| |||    
T  28385720 gcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacatatgttttggaagcataaaccatttctctgataaacaactatatgag 28385621  T
Q  145 atggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctgagaagaaagggaaagaagatga 218  Q
    || ||||| ||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385620 attgcatgcgcagtagaagcatcaggtcacccattcatatgggttgttcctgagaagaaagggaaagaagatga 28385547  T

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Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 12541104 - 12540898
Alignment:
Q  12 agcagagaggggaaatgagggtgctgcgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagc 111  Q
    ||||| |||||||||||||||||||||||  | |||||||  ||| || |||||| | ||| ||  ||||||||||||| ||||||||||||||||||||    
T  12541104 agcagggaggggaaatgagggtgctgcgagcgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagc 12541005  T
Q  112 atcaactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctgagaagaaagggaaag 211  Q
    || ||  |||| | ||| ||||||||||| ||||| ||||||||  |||||| |   |||||||||||||||||||||||||||||||||| ||||||||    
T  12541004 ataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacccattcatatgggttgttcctgagaagagagggaaag 12540905  T
Q  212 aagatga 218  Q
    |||||||    
T  12540904 aagatga 12540898  T

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Target: scaffold0536 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 81 - 218
Target Start/End: Original strand, 6337 - 6474
Alignment:
Q  81 taactcagtgttgtacatatgttttggaagcatcaactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattc 180  Q
    ||||||||||||||||||||| ||||||||| |   |  |||  | ||||||||||| |||||||| ||||||| |||||||||||| ||||||  ||||    
T  6337 taactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattc 6436  T
Q  181 atatgggttgttcctgagaagaaagggaaagaagatga 218  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6437 atatgggttgttcctgagaagaaagggaaagaagatga 6474  T

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Target: scaffold0536; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 212
Target Start/End: Original strand, 10323 - 10450
Alignment:
Q  85 tcagtgttgtacatatgttttggaagcatcaactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatat 184  Q
    |||||||||||||| || ||||||||| |    |||||||| ||||||||||| || ||||| || ||   | |||||||||| ||| ||  |||  |||    
T  10323 tcagtgttgtacatttgctttggaagcctatgttatttttcagataaacaactttatgagattgcgtgcagggtagaagcatcgggttacgaatttgtat 10422  T
Q  185 gggttgttcctgagaagaaagggaaaga 212  Q
    | ||||||||||||||||||||||||||    
T  10423 gagttgttcctgagaagaaagggaaaga 10450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 81 - 215
Target Start/End: Complemental strand, 48958497 - 48958363
Alignment:
Q  81 taactcagtgttgtacatatgttttggaagcatcaactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattc 180  Q
    ||||||||||||||||||||| |||||||||||    ||||| |||||||||||||| || ||||| || |||| |||||||||||| ||||||  |||     
T  48958497 taactcagtgttgtacatatgctttggaagcatatgttatttatctgataaacaactttatgagattgcgtgtgggatagaagcatcaggtcacgaattt 48958398  T
Q  181 atatgggttgttcctgagaagaaagggaaagaaga 215  Q
     ||||||||||||||||||||||||||||||||||    
T  48958397 gtatgggttgttcctgagaagaaagggaaagaaga 48958363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 48974383 - 48974322
Alignment:
Q  157 atagaagcatccggtcacccattcatatgggttgttcctgagaagaaagggaaagaagatga 218  Q
    ||||||||||| ||||||| ||||||||||||||| || ||||||||||||||||| |||||    
T  48974383 atagaagcatcgggtcaccaattcatatgggttgtccccgagaagaaagggaaagaggatga 48974322  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 204
Target Start/End: Original strand, 48912209 - 48912294
Alignment:
Q  119 atttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctgagaagaaa 204  Q
    ||||||| ||||||||||| || ||||| || || | ||| ||||||||  |||||  ||||||||||||||||||||| ||||||    
T  48912209 atttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaa 48912294  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 48961569 - 48961516
Alignment:
Q  158 tagaagcatccggtcacccattcatatgggttgttcctgagaagaaagggaaag 211  Q
    |||||||||| ||||||  |||  ||||||||||||||||||| ||||||||||    
T  48961569 tagaagcatcgggtcacgaatttgtatgggttgttcctgagaaaaaagggaaag 48961516  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 12589926 - 12590132
Alignment:
Q  12 agcagagaggggaaatgagggtgctgcgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagc 111  Q
    |||||| |||||||||||| ||| || ||| ||||| ||| | |||||||||||  | ||  || ||| |||||| |||||||||||||| ||||| |||    
T  12589926 agcagataggggaaatgagagtgttgtgaacgtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttgggagc 12590025  T
Q  112 atcaactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctgagaagaaagggaaag 211  Q
    ||   |||||| || ||||||||||| || |||||  | ||||  ||||||||||| || |||  |||| |||||||| |||| ||||| |||||||| |    
T  12590026 atatgctatttctcagataaacaactttatgagatttcgtgtggcatagaagcatcaggccacgaattcgtatgggttattcccgagaaaaaagggaagg 12590125  T
Q  212 aagatga 218  Q
    |||||||    
T  12590126 aagatga 12590132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 218
Target Start/End: Original strand, 12483294 - 12483427
Alignment:
Q  85 tcagtgttgtacatatgttttggaagcatcaactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatat 184  Q
    ||||||||||||||||| ||||| ||| |   | |||| ||||||||||| || ||||| ||  |||| |  ||||||||||| ||| |   ||||||||    
T  12483294 tcagtgttgtacatatgctttgggagcctatgcaatttctctgataaacagctttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatat 12483393  T
Q  185 gggttgttcctgagaagaaagggaaagaagatga 218  Q
    |||||||||||||||| |||||||| ||||||||    
T  12483394 gggttgttcctgagaaaaaagggaaggaagatga 12483427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 218
Target Start/End: Original strand, 12641285 - 12641444
Alignment:
Q  59 gttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcatcaactatttttctgataaacaactatacgagatggcatgtgcgat 158  Q
    |||||||| ||||| ||  || ||| |||||||| |||||||||||||| ||||||   ||||| |||||||||||||| |||||||| ||  | |  ||    
T  12641285 gttggctcaattcaaagcaagataattcagtgttatacatatgttttgggagcatctcttatttctctgataaacaactttacgagattgcgagcggaat 12641384  T
Q  159 agaagcatccggtcacccattcatatgggttgttcctgagaagaaagggaaagaagatga 218  Q
    ||||   || ||||||  |||  ||||||||||||||||||||||||||||| |||||||    
T  12641385 agaaaattcaggtcacgaatttgtatgggttgttcctgagaagaaagggaaaaaagatga 12641444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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