View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16462_low_30 (Length: 207)

Name: NF16462_low_30
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16462_low_30
NF16462_low_30
[»] chr2 (14 HSPs)
chr2 (1-188)||(32207123-32207310)
chr2 (4-122)||(32212201-32212319)
chr2 (2-110)||(32118491-32118600)
chr2 (2-111)||(32147582-32147691)
chr2 (34-109)||(32152345-32152420)
chr2 (2-74)||(32157558-32157630)
chr2 (4-111)||(32156411-32156518)
chr2 (2-87)||(32182297-32182382)
chr2 (2-111)||(32174187-32174296)
chr2 (4-111)||(32110227-32110334)
chr2 (2-97)||(2821320-2821414)
chr2 (4-51)||(32534228-32534275)
chr2 (12-87)||(32153369-32153444)
chr2 (48-111)||(32182216-32182279)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 32207123 - 32207310
Alignment:
Q  1 ctgtgatgcaacagaatgtctagaagaccttatcaaatccctccaagccaagaaaatgatcaaggaagacattaataatgaagaaaatgtcaaagaagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32207123 ctgtgatgcaacagaatgtctagaagaccttatcaaatccctccaagccaagaaaatgatcaaggaagacattaataatgaagaaaatgtcaaagaagaa 32207222  T
Q  101 catgaactaggcagctatgaagaagggactgcggcagactccgacacaggctccaacacgaacacatgacatgacactgacacgaaca 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32207223 catgaactaggcagctatgaagaagggactgcggcagactccgacacaggctccaacacgaacacatgacatgacactgacacgaaca 32207310  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 32212201 - 32212319
Alignment:
Q  4 tgatgcaacagaatgtctagaagaccttatcaaatccctccaagccaagaaaatgatcaaggaagacattaataatgaagaaaatgtcaaagaagaacat 103  Q
    |||||| |||||||| ||| |||||||||||||||||||||||||||||||||| || |||||||| || || |||||||||||| ||||||||||||||    
T  32212201 tgatgctacagaatgcctacaagaccttatcaaatccctccaagccaagaaaatcatgaaggaagagataaaaaatgaagaaaatatcaaagaagaacat 32212300  T
Q  104 gaactaggcagctatgaag 122  Q
    |||||||| ||||||||||    
T  32212301 gaactaggtagctatgaag 32212319  T

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Target: chr2; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 32118600 - 32118491
Alignment:
Q  2 tgtgatgcaacagaatgtctagaagaccttatcaaatccctccaagccaagaaaatgatcaaggaagacatta-ataatgaagaaaatgtcaaagaagaa 100  Q
    |||||||| |||||||| ||| ||||||||||  |||||||||||||||||||||||||||||||||| || | | |||||||||||| |||||||||||    
T  32118600 tgtgatgctacagaatgcctacaagaccttattgaatccctccaagccaagaaaatgatcaaggaagagatgatagaatgaagaaaatatcaaagaagaa 32118501  T
Q  101 catgaactag 110  Q
    ||||||||||    
T  32118500 catgaactag 32118491  T

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Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 32147691 - 32147582
Alignment:
Q  2 tgtgatgcaacagaatgtctagaagaccttatcaaatccctccaagccaagaaaatgatcaaggaagacattaataatgaagaaaatgtcaaagaagaac 101  Q
    |||||||| |||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||| || || | ||||||||||  ||||||||||     
T  32147691 tgtgatgctacagaatgcctacaagaccttatcaaattcctccaagccaagaaaatgatcaaggaagagataaagattgaagaaaataacaaagaagaag 32147592  T
Q  102 atgaactagg 111  Q
     |||||||||    
T  32147591 gtgaactagg 32147582  T

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Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 32152420 - 32152345
Alignment:
Q  34 caaatccctccaagccaagaaaatgatcaaggaagacattaataatgaagaaaatgtcaaagaagaacatgaacta 109  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||| | |||||| |||||||||||||    
T  32152420 caaatccttccaagccaagaaaatgatcaaggaagacattaaaaatgaagaaattatcaaaggagaacatgaacta 32152345  T

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Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 32157630 - 32157558
Alignment:
Q  2 tgtgatgcaacagaatgtctagaagaccttatcaaatccctccaagccaagaaaatgatcaaggaagacatta 74  Q
    |||||||| |||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  32157630 tgtgatgctacagaatgcctacaagaccttatcaaattcctccaagccaagaaaatgatcaaggaagagatta 32157558  T

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Target: chr2; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 32156518 - 32156411
Alignment:
Q  4 tgatgcaacagaatgtctagaagaccttatcaaatccctccaagccaagaaaatgatcaaggaagacattaataatgaagaaaatgtcaaagaagaacat 103  Q
    |||||| |||||||| ||| ||||||||||||||| ||||||||  ||||||||||  |||||||| || || || |||||||||||||||||||||  |    
T  32156518 tgatgctacagaatgcctacaagaccttatcaaattcctccaagtaaagaaaatgaaaaaggaagagataaagaaggaagaaaatgtcaaagaagaatct 32156419  T
Q  104 gaactagg 111  Q
    ||||||||    
T  32156418 gaactagg 32156411  T

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Target: chr2; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 32182382 - 32182297
Alignment:
Q  2 tgtgatgcaacagaatgtctagaagaccttatcaaatccctccaagccaagaaaatgatcaaggaagacattaataatgaagaaaa 87  Q
    |||||||| |||||||| ||| ||||||||||||||| ||| ||||||||||||||||||||||||||  | || |||||||||||    
T  32182382 tgtgatgctacagaatgcctacaagaccttatcaaattcctgcaagccaagaaaatgatcaaggaagaggtaaagaatgaagaaaa 32182297  T

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Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 32174296 - 32174187
Alignment:
Q  2 tgtgatgcaacagaatgtctagaagaccttatcaaatccctccaagccaagaaaatgatcaaggaagacattaataatgaagaaaatgtcaaagaagaac 101  Q
    |||||||| |||||||| ||| |||||||||| | || ||||||||| ||||||||||||||||||||  | || |||||||||||  | |||||||||     
T  32174296 tgtgatgctacagaatgcctacaagaccttataatattcctccaagcaaagaaaatgatcaaggaagaggtaaaaaatgaagaaaacattaaagaagaag 32174197  T
Q  102 atgaactagg 111  Q
     |||||||||    
T  32174196 gtgaactagg 32174187  T

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Target: chr2; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 32110334 - 32110227
Alignment:
Q  4 tgatgcaacagaatgtctagaagaccttatcaaatccctccaagccaagaaaatgatcaaggaagacattaataatgaagaaaatgtcaaagaagaacat 103  Q
    |||||| ||||||||  || ||||||||||||||| ||||||||||||||||||| || ||||||| | ||| |  |||||||||  ||||||||||||     
T  32110334 tgatgctacagaatgcttacaagaccttatcaaattcctccaagccaagaaaatggtccaggaagagagtaagagagaagaaaatagcaaagaagaacaa 32110235  T
Q  104 gaactagg 111  Q
    || |||||    
T  32110234 gatctagg 32110227  T

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Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 2821320 - 2821414
Alignment:
Q  2 tgtgatgcaacagaatgtctagaagaccttatcaaatccctccaagccaagaaaatgatcaaggaagacattaataatgaagaaaatgtcaaagaa 97  Q
    |||||||| ||| |||| ||| ||||||||||||||| ||||||||||||| ||| ||| |||||||| || || |||||||||||  ||||||||    
T  2821320 tgtgatgctacaaaatgcctacaagaccttatcaaattcctccaagccaag-aaacgatgaaggaagagataaagaatgaagaaaacatcaaagaa 2821414  T

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Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 32534275 - 32534228
Alignment:
Q  4 tgatgcaacagaatgtctagaagaccttatcaaatccctccaagccaa 51  Q
    |||||| |||||||| ||| ||||||||||||||||||||||||||||    
T  32534275 tgatgctacagaatgcctacaagaccttatcaaatccctccaagccaa 32534228  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 32153444 - 32153369
Alignment:
Q  12 cagaatgtctagaagaccttatcaaatccctccaagccaagaaaatgatcaaggaagacattaataatgaagaaaa 87  Q
    ||||||| ||| || |||||||||||| |||||||||||||||||| |||||  | || || || |||||||||||    
T  32153444 cagaatgcctacaataccttatcaaattcctccaagccaagaaaatcatcaaacatgagataaagaatgaagaaaa 32153369  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 32182279 - 32182216
Alignment:
Q  48 ccaagaaaatgatcaaggaagacattaataatgaagaaaatgtcaaagaagaacatgaactagg 111  Q
    |||||||||||||| ||||||| |  || |||||||||||| |||||||||||  |||||||||    
T  32182279 ccaagaaaatgatcgaggaagagacaaagaatgaagaaaatatcaaagaagaaggtgaactagg 32182216  T

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