View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16462_low_4 (Length: 655)
Name: NF16462_low_4
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16462_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 381 - 637
Target Start/End: Original strand, 29306496 - 29306747
Alignment:
| Q |
381 |
taaaaaatttagagttcttcacattagtattccagccggcgtaaatgtggctcatcggccatatttgtctgcattttgccgcaatataaaggcttacaac |
480 |
Q |
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| T |
29306496 |
taaaaaatttagagttcttcacattagtattgcagccg---taaatgtggctcatcggccatatttgtctgcattttgccgcaatataaaggcttacaac |
29306592 |
T |
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| Q |
481 |
gcaactgcgatcacagttgctgttttgatctctgaatctctgcatctctcaaactatattgtgtcccatctcagtacatatatcaccgttaattgcacac |
580 |
Q |
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| T |
29306593 |
gcaactgcgatcacagttgctgttttgatctcagaatctctgcatctctcaaac--taatgtgtcccatctcagtacctatatcaccgttaattgcacac |
29306690 |
T |
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| Q |
581 |
ttttcacaaagtattcttcgttgtttcggagaaaaccataaagttcttggtgtatgg |
637 |
Q |
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| T |
29306691 |
ttttcacaaagtattcttcgttgtttcggagaaaaccataaagttcttggtgtatgg |
29306747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 29306451 - 29306501
Alignment:
| Q |
10 |
attattcttcagttgaggtttgtgttatgatcattagtttatttttaaaaa |
60 |
Q |
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| T |
29306451 |
attattcttcagttgaggtttgtgttatgatcattagtttatttttaaaaa |
29306501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 29297691 - 29297736
Alignment:
| Q |
10 |
attattcttcagttgaggtttgtgttatgatcattagtttattttt |
55 |
Q |
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| T |
29297691 |
attattcttcagttaaggtttgtgttatgctcattagtttaatttt |
29297736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 29297939 - 29298007
Alignment:
| Q |
79 |
acaaagcatgcttcatgcagaattttcaaattatcc-agaaaaagtaaataataagaatggactttcaa |
146 |
Q |
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| T |
29297939 |
acaaagcatgcttcatgcagagttttcaacttatccaaaaaaaaacaaataatcataatggactttcaa |
29298007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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