View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16462_low_5 (Length: 606)
Name: NF16462_low_5
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16462_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 276 - 592
Target Start/End: Original strand, 10047730 - 10048052
Alignment:
| Q |
276 |
aaagagttaatcacgccaacatattgagccgagccaaagcaaaattatgtactcggctgtatga------agtcacgtgacaagaattcggtgtatggtc |
369 |
Q |
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| T |
10047730 |
aaagagttaatcacgccaacatattgagccgagccaaagcaaaattatgtactcggctgtatgattggtgagtcacgtgacaaggattcggtgtatggtc |
10047829 |
T |
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| Q |
370 |
ctacaccagcagtatatagtttctaggtagggagatgatatcatgtctgtgtatctgcaggacaatctaagtagaattcagtgccataaatatttatccc |
469 |
Q |
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| T |
10047830 |
ctataccagcagtatatagtttctaggtagggagatgatatcatgtctgtgtatctgcaggacaatgtaagtagaattcagtgccataaatatttatccc |
10047929 |
T |
|
| Q |
470 |
agttcgtctgatttctcaattgattctttacctctaatgttttcttgtaaatcttgcgttcttttgtttaaaatcaaattacagtagagaacatatttgt |
569 |
Q |
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| T |
10047930 |
agtgtgtctgatttctcaattgattctttacctctaatgttttcttgtaaatcttgcgttcttttgtttaaaatcaaattacagtagagaacatatttgt |
10048029 |
T |
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| Q |
570 |
catcacatccatgttttaggtcc |
592 |
Q |
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| T |
10048030 |
catcacatgcatgttttaggtcc |
10048052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 10047634 - 10047734
Alignment:
| Q |
18 |
ccaaatccgtttggtacgcctttaaacaagaaaacaggtcagtttgatcaatagtaccctagttttcttggaccacatatatgatggtccaaccatgcat |
117 |
Q |
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| T |
10047634 |
ccaaatccgtttggtacgcctttaaacaagaaaacaggtcagtttgatcaa--------tagttttgttggaccacaaatatgatggtccaaccatgcat |
10047725 |
T |
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| Q |
118 |
aataaaaga |
126 |
Q |
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| T |
10047726 |
aataaaaga |
10047734 |
T |
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