View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16462_low_8 (Length: 490)
Name: NF16462_low_8
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16462_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 13 - 473
Target Start/End: Original strand, 39578588 - 39579048
Alignment:
| Q |
13 |
catcatcataggaaatgaaattcttctcaatatgtttggaccgacaaagctaagcctagaaagtagatcctcaacaagaaaatcaatatatgttcaagat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39578588 |
catcatcataggaaatgaaattcttctcaatatgtttggaccgacaaagctaagcctagaaagtagatcctcaacaagaaaatcaatatatgttcaagat |
39578687 |
T |
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| Q |
113 |
ccaattaagtctaacttgagaaatatcaattatgtatgtaccctaaggtttataatagttctaagtgttacaaaagannnnnnnnnnnnnnnagaggaaa |
212 |
Q |
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| T |
39578688 |
ccaattaagtttaacttgagaaatatcaattatgtatgtaccctaaggtttataatagttctaagtgttacaaaagatttttttatttttttagaggaaa |
39578787 |
T |
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| Q |
213 |
gtgttacaaaagattgaagagtgataattgtgacatatattgcataattgtgactatgtgtgcgtgcacgcgcacattgcataatcgtgagtatgtgtgc |
312 |
Q |
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| T |
39578788 |
gtgttacaaaagattgaagagtgataattgtgacatatattgcataattgtgagtatgtgtgcgtgcacgcgcacattgcataatcgtgagtatgtgtgc |
39578887 |
T |
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| Q |
313 |
atgcgtgcgcacgtgtttgtgtgtcggactgtcgcttattgtgtcatccttgaatgacttggtgttgtcccaccaatgtttgtctttgtcctttctaata |
412 |
Q |
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| T |
39578888 |
atgcgtgcgcacgcgtttgtgtgtcggactttcgcttattgtgtcatccttgaatgacttgttgttgtcccaccaatgtttgtctttgtcctttctaata |
39578987 |
T |
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| Q |
413 |
tatgaatgctttgtcgaggaaatatgttgtatcacccacaacaaatgcttttgattgaaat |
473 |
Q |
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| T |
39578988 |
tatgaatgctttgtcgaggaaatatgttgtatcacccacaacaaatgcttttgattgaaat |
39579048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 419
Target Start/End: Complemental strand, 35268986 - 35268927
Alignment:
| Q |
360 |
ccttgaatgacttggtgttgtcccaccaatgtttgtctttgtcctttctaatatatgaat |
419 |
Q |
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| T |
35268986 |
ccttgaatgacttgtacttgtcccaccaatgtttgcctctgtcctttcgaatagatgaat |
35268927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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