View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16462_low_9 (Length: 485)
Name: NF16462_low_9
Description: NF16462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16462_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 22 - 467
Target Start/End: Complemental strand, 54150902 - 54150460
Alignment:
| Q |
22 |
tatacctagctaggacacatatataagataatactgactataatacacaaaagatgattaccattatcagaggaaaatttgaaaaagcagtgtaagtttt |
121 |
Q |
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| T |
54150902 |
tatacctagctagaacacatatataagatcatactgactataatacacaaaagatgattaccattatcagaggaaattttgaaaaagcagtgtaagtttt |
54150803 |
T |
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| Q |
122 |
caaaggaatattctcatgaccaaccaagtcataaaaggataagaagccaatttcttcaagagaatgctccatggattttctcatgtcatatgtttcatga |
221 |
Q |
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| T |
54150802 |
caaaggaatattctcatgaccaaccaagtcataaaaggataagaagccaatttcttcaagagaatgctccattgattttctcatgtcatatgtttcaaga |
54150703 |
T |
|
| Q |
222 |
gatcgaaagagtcttgagaggcacacggtgataattttgtaatttgaccatgttttgagtacttctctcaacaaaacttcattttcctttgctcgcagag |
321 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
54150702 |
gatctaaagagtcttgagaggcacacggtgataattttgtaatttgaccatgttttgagtagttctctcaacaaaatttcattttcctttgctcgcagag |
54150603 |
T |
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| Q |
322 |
atggcaaaacctaattcatgacgagaaaatgttttagttaattttacgcatgtgattaaattaacaactactaagattttattattatacttacatttgt |
421 |
Q |
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| T |
54150602 |
atggcaaaacctaattcatgacgagaaaatgttttagttaattttacgcatgtgattaaattaacaactactaagatttta---ttatacttacatttgt |
54150506 |
T |
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| Q |
422 |
ctaggaaattaattagacgtaccttggaattcatgtatttagcaaa |
467 |
Q |
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| T |
54150505 |
ctaggaaattaattagacgtaccttggaattaatgtatttagcaaa |
54150460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 49485266 - 49485318
Alignment:
| Q |
133 |
tctcatgaccaaccaagtcataaaaggataagaagccaatttcttcaagagaa |
185 |
Q |
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| T |
49485266 |
tctcatcaccaaccaagtgatagaaggataagaagccagtttcttcaagagaa |
49485318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 49531969 - 49532021
Alignment:
| Q |
133 |
tctcatgaccaaccaagtcataaaaggataagaagccaatttcttcaagagaa |
185 |
Q |
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| T |
49531969 |
tctcatcaccaaccaagtcatagaaggacaacaagccaatttcttcaagagaa |
49532021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 336
Target Start/End: Original strand, 49701895 - 49701979
Alignment:
| Q |
252 |
ataattttgtaatttgaccatgttttgagtacttctctcaacaaaacttcattttcctttgctcgcagagatggcaaaacctaat |
336 |
Q |
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| T |
49701895 |
ataattttgtgatttgaccatctttcaagtagttctctcaacaaaagttcatctttcttttctctcaaagatggcagaacctaat |
49701979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 49701783 - 49701828
Alignment:
| Q |
140 |
accaaccaagtcataaaaggataagaagccaatttcttcaagagaa |
185 |
Q |
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| T |
49701783 |
accaaccaagtaatagaaggataagaagccagtttcttcaagagaa |
49701828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 325
Target Start/End: Complemental strand, 55066721 - 55066649
Alignment:
| Q |
253 |
taattttgtaatttgaccatgttttgagtacttctctcaacaaaacttcattttcctttgctcgcagagatgg |
325 |
Q |
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|||||||||||||||||||| || ||| | ||||||||||||| ||||| || |||| || |||||||||| |
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| T |
55066721 |
taattttgtaatttgaccatcttctgaacagttctctcaacaaaggttcatcttgcttttcttgcagagatgg |
55066649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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