View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16463_high_3 (Length: 383)
Name: NF16463_high_3
Description: NF16463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16463_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 11119450 - 11119824
Alignment:
| Q |
1 |
aacctatcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11119450 |
aacctatcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcgt |
11119549 |
T |
|
| Q |
101 |
tgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcatttcctaaatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
11119550 |
tgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataaaatcagcaacatttataccatttcctaaatt |
11119649 |
T |
|
| Q |
201 |
caccttaggttcaacatacaattcaacatcacacttcttatcacgagcataattagacattgtagttgcatcagtatcattcctgaatggcttaaggtct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
11119650 |
caccttaggttcaacatacaattcaacatcacacttcttatcacgagcataattagacattgcagttgcatcagtatcattactgaatggcttgaggtct |
11119749 |
T |
|
| Q |
301 |
tcatccaatgaaccactctcatgtttccaccataaccttactaacccttcatcaaaagtatcatccattttcttc |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11119750 |
tcatccaatgaaccactctcatgtttccaccataaccttactaacccttcatcaaaagtatcatccatttccttc |
11119824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 12 - 375
Target Start/End: Original strand, 12205970 - 12206321
Alignment:
| Q |
12 |
aaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcattgtctgcttca |
111 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
12205970 |
aaccccagccatcctctcttcttcactatcattaaagtgtgcgcctttaattgaatcaccatcatcactactaacatcttcatcatcactgtctgcttca |
12206069 |
T |
|
| Q |
112 |
ccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcatttcctaaattcaccttaggtt |
211 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12206070 |
ccaacattgccttcaacttaatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcaccttagg-- |
12206167 |
T |
|
| Q |
212 |
caacatacaattcaacatcacacttcttatcacgagcataattagacattgtagttgcatcagtatcattcctgaatggcttaaggtcttcatccaatga |
311 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||| | ||||||||||||||| |
|
|
| T |
12206168 |
----------ttcaacatcacagttcttatcacgagcataatcagacattaaggttgcatcagtatcattcctgattggcttgacgtcttcatccaatga |
12206257 |
T |
|
| Q |
312 |
accactctcatgtttccaccataaccttactaacccttcatcaaaagtatcatccattttcttc |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
12206258 |
accactctcatgtttccaccataaccttactaacccttcatcaaaagtatcatcaatttccttc |
12206321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 32741154 - 32741528
Alignment:
| Q |
1 |
aacctatcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcat |
100 |
Q |
| |
|
|||| |||||||||| |||||||| ||||||||||||| |||| |||| |||||||||| ||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
32741154 |
aacccatcatcaaccgcagccatcttctcttcttcactatcatcaaagcgtgtgcctttaattaaatcaccatcatcactactaacatctccaccatcga |
32741253 |
T |
|
| Q |
101 |
tgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcatttcctaaatt |
200 |
Q |
| |
|
||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
32741254 |
tgtctacttcaccaacatcgccttcaatttcatccgccactacaccctttcccttttgttccccaataacatcagcaacaattatagcatttcctaaatt |
32741353 |
T |
|
| Q |
201 |
caccttaggttcaacatacaattcaacatcacacttcttatcacgagcataattagacattgtagttgcatcagtatcattcctgaatggcttaaggtct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32741354 |
caccttaggttcaacatacaattcaacatcgcacttgttatcacgagcataatcagacattgcagttgcatcagtatcattcctgaatggcttgaggtct |
32741453 |
T |
|
| Q |
301 |
tcatccaatgaaccactctcatgtttccaccataaccttactaacccttcatcaaaagtatcatccattttcttc |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
32741454 |
tcatccaatgaaccactctcatgtttccaccatagctttactaactattcatcaaaagtatcatccatttccttc |
32741528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University