View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16464_high_2 (Length: 404)
Name: NF16464_high_2
Description: NF16464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16464_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 44924033 - 44923660
Alignment:
| Q |
1 |
aatattagttcaatcaaatctgtggtgtatgtttgtttatcctggaaatgctcatgttcatgtgccacaaaacacaagtccatctgtttgtttaccacaa |
100 |
Q |
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| T |
44924033 |
aatattagttcaatcaaatctgtggtgtatgtttgtttatcctggaaatgctcatgttcatgtgccacaaaacacaagtccatctgtttgtttaccacaa |
44923934 |
T |
|
| Q |
101 |
ctccctaaggtgtctgttagaaaggacataagtttcattttcttgctggtagttgcaacatagaaaatcacatcttttaatccaccttctttgttcaaag |
200 |
Q |
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|||||| |||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44923933 |
ctccctcaggtgtctgttagaga--------------ttttcttgctggtagttgcaacatagaaaatcac--------------cttctttgttcaaag |
44923862 |
T |
|
| Q |
201 |
aaagggaatatccctctggatccttacctaagtagcacgcataccttgatcaaggtggttacgctactctccttgttcatcaaactgatgaatgcgtcct |
300 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44923861 |
aaagggaattaccctctggatccttacctaagtagcacgcataccttgatcaaggtggttacgctactctccttgttcatcaaactgatgaatgcgtcct |
44923762 |
T |
|
| Q |
301 |
tgaaattgttgcacttttgtgtgcgtccaatctgtcaaggttcaaggttggttgtcaccccatgataacacccataagtactggctttgaatctctgctc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||| |
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| T |
44923761 |
tgaaattgttgcacttttgtgtgcgtccaatctgtcaaggttcaaggttggttgtcaccccatgataacaccc-taagtactggcttcgaatctcagctc |
44923663 |
T |
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