View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16464_high_4 (Length: 229)
Name: NF16464_high_4
Description: NF16464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16464_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 44924228 - 44924010
Alignment:
| Q |
1 |
tagttggatgatatagtctgtgatttgtactcctcctgacattttaatcacaaattaaggttggttttgaattatctgttattgttttcgtttcatcctc |
100 |
Q |
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| T |
44924228 |
tagttggatgatatagtctgtgatttgtactcctcctgacattttaatcacaaattaaggttggttttgaattatctgttattgttttcttttcatcctc |
44924129 |
T |
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| Q |
101 |
ctgataaaaacaactgtttgtgtattgtttattctagtatcctgggactgttggtagaaactcaaatccggctcaagttccttccttaatataaaaatat |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44924128 |
ctgataaaaacaactgtttgtgtgttgtttattctagtatcctgggactgttggtagaaactcaaatccggcacaagttccttccttaatataaaaatat |
44924029 |
T |
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| Q |
201 |
tagttcaatcaaatctgtg |
219 |
Q |
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||||||||||||||||||| |
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| T |
44924028 |
tagttcaatcaaatctgtg |
44924010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 29515060 - 29515124
Alignment:
| Q |
65 |
ttttgaattatctgttattgttttcgtttcatcctcctgataaaaacaactgtttgtgtattgtt |
129 |
Q |
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| T |
29515060 |
ttttgaattacttgttgctgtattcttttcatcctcctgataaaaacaactgtttgtgtgttgtt |
29515124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29514930 - 29514984
Alignment:
| Q |
1 |
tagttggatgatatagtctgtgatttgtactcctcctgacattttaatcacaaat |
55 |
Q |
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|||||| |||||||||| |||||||||||| || | ||||||||||| ||||||| |
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| T |
29514930 |
tagttgaatgatatagtttgtgatttgtacaccacttgacattttaaacacaaat |
29514984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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