View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16464_low_1 (Length: 425)
Name: NF16464_low_1
Description: NF16464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16464_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 409
Target Start/End: Complemental strand, 8787769 - 8787384
Alignment:
| Q |
19 |
atataatcaaattagtatatgaatcaaatgagccgatacacataca------tatatctaaagttgagcacattctgctacaaattttgttaagnnnnnn |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8787769 |
atataatcaaattagtatatgaatcaaatgagtcgatacacatacacatacatatatctaaagttgagcacattttgctacaaattttgttaagaaaaaa |
8787670 |
T |
|
| Q |
113 |
nc-attatttaaaagaatgtattcaaatagaaatacaaattttgatacaaataccttctaattttaatacaaactttatatagcatagtattattatacg |
211 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8787669 |
aatattatttaaaagcatgtatccaaatagaaatacaaat------------accttctaattttaatacaaactttatatagcatagtattattatacg |
8787582 |
T |
|
| Q |
212 |
ttccaaaagtatatactccacattattaattgaaatatgaagagaggggtccccaatgaacttgatattaatttgattttgctgatgtggggtttcacct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8787581 |
ttccaaaagtatatactccacattattaattgaaatatcaagagaggggtccccaatgaacttgatattaatttgattttgctgatgtggggttttacct |
8787482 |
T |
|
| Q |
312 |
atactcacctatactctatagggtccggattatgttggttggtatctnnnnnnngaagggtgagggcggcggcaccaccttcctctcaatatcaatag |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8787481 |
atactcacctatactctatagggtccggattatgttggttggtatctaaaaaaagaagggtgagggcggcggcaccaccttcctctcaatatcaatag |
8787384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University