View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16464_low_3 (Length: 400)
Name: NF16464_low_3
Description: NF16464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16464_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 12 - 385
Target Start/End: Original strand, 46040177 - 46040555
Alignment:
| Q |
12 |
atcatcaattcaccacccttataaaattctaatttaatcctaaa-----attacaaggatagtacaacaataccatgattaaattaataccaagaatcca |
106 |
Q |
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| T |
46040177 |
atcatcaattcaccacccttataaaattctaatttaatcctaaaataaaattacaaggatagtacaacaataccatgattaaattaataccaagaatcca |
46040276 |
T |
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| Q |
107 |
agaccagcatttatcgtgagtttcccagaaagcacaagactattagcagtgaccctaacttaatataataatatcatatagccaccgacgcgctttatgt |
206 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46040277 |
agactagcatttatcgtgagtttcccagaaagcacaagactactagcagtgaccctaacttaatataataatatcatatagccaccgacgcgctttatgt |
46040376 |
T |
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| Q |
207 |
tccaaacctttcaaaaggcacatcccattcatcacattcataccaaaataagtcacacctctcttcctaactcttcatttcaattttgctctatctttat |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
46040377 |
tccaaacctttcaaaaggcacatcccattcatcacattcataccaaaataagtcacacctctcttccaaacttttcatttcaattttgctctatctttat |
46040476 |
T |
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| Q |
307 |
tattttgtcaactacatactctaaccaattaatatgtcaaaggttaaagttgatcaacttaatcaactaagagaaatct |
385 |
Q |
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|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46040477 |
tattttgtcaactacagactctaaacaattaatatgtcaaaggttaaagttgatcaacttaatcaactaagagaaatct |
46040555 |
T |
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