View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16464_low_4 (Length: 262)

Name: NF16464_low_4
Description: NF16464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16464_low_4
NF16464_low_4
[»] chr4 (6 HSPs)
chr4 (87-235)||(46514208-46514356)
chr4 (87-195)||(46514885-46514993)
chr4 (86-193)||(33352899-33353006)
chr4 (130-193)||(53523703-53523766)
chr4 (86-147)||(44817740-44817801)
chr4 (86-163)||(16897609-16897686)
[»] chr1 (6 HSPs)
chr1 (86-227)||(13259612-13259753)
chr1 (86-238)||(29117346-29117496)
chr1 (86-217)||(29116709-29116838)
chr1 (87-193)||(13258964-13259071)
chr1 (86-193)||(26778866-26778973)
chr1 (87-193)||(27773239-27773345)
[»] chr2 (3 HSPs)
chr2 (86-236)||(28020104-28020255)
chr2 (86-217)||(28020755-28020884)
chr2 (114-171)||(33045122-33045179)
[»] chr7 (5 HSPs)
chr7 (87-196)||(43444456-43444565)
chr7 (102-193)||(17889514-17889605)
chr7 (86-182)||(17888543-17888639)
chr7 (114-182)||(17890404-17890472)
chr7 (86-146)||(48626817-48626876)
[»] chr3 (1 HSPs)
chr3 (86-163)||(42933487-42933564)
[»] scaffold0091 (1 HSPs)
scaffold0091 (116-193)||(3581-3658)
[»] chr8 (2 HSPs)
chr8 (86-182)||(526795-526891)
chr8 (86-205)||(33181050-33181170)


Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 87 - 235
Target Start/End: Original strand, 46514208 - 46514356
Alignment:
Q  87 tgagaatgacttctttatataagaatgtgagaatacaatatcaaccctttagattaaaatgaaaggcttaaatttaaagttccaaaataaacatcaggtg 186  Q
    ||||||||||||  |||||| |||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  46514208 tgagaatgactttgttatatgagaatgtgagaatacaatatcagccctttagattaaaatgaaagacttagatttaaagttccaaaataaacatcaggtg 46514307  T
Q  187 gaccatcgcttcttcttttttcctccgcgttccaacacaactacctcta 235  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  46514308 gaccatcgcttcttcttttttcctccacgttccaacacaactgcctcta 46514356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 46514993 - 46514885
Alignment:
Q  87 tgagaatgacttctttatataagaatgtgagaatacaatatcaaccctttagattaaaatgaaaggcttaaatttaaagttccaaaataaacatcaggtg 186  Q
    ||||||||||||  |||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46514993 tgagaatgactttgttatatgagaatgtgagaatacaatatcagccctttagattaaaatgaaaggcttagatttaaagttccaaaataaacatcaggtg 46514894  T
Q  187 gaccatcgc 195  Q
    |||||||||    
T  46514893 gaccatcgc 46514885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 193
Target Start/End: Complemental strand, 33353006 - 33352899
Alignment:
Q  86 gtgagaatgacttctttatataagaatgtgagaatacaatatcaaccctttagattaaaatgaaaggcttaaatttaaagttccaaaataaacatcaggt 185  Q
    |||||||||||||  |||||| |||||||||||||| | || ||  | ||||||||||||||||||| ||| |||||| ||||||| | || ||||| ||    
T  33353006 gtgagaatgactttcttatatgagaatgtgagaatatattaacagtcatttagattaaaatgaaaggtttagatttaatgttccaataaaagcatcacgt 33352907  T
Q  186 ggaccatc 193  Q
    ||||||||    
T  33352906 ggaccatc 33352899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 53523766 - 53523703
Alignment:
Q  130 accctttagattaaaatgaaaggcttaaatttaaagttccaaaataaacatcaggtggaccatc 193  Q
    |||||||||||| ||||||||| |||| ||||||||| ||||||||||||| | ||||||||||    
T  53523766 accctttagatttaaatgaaagacttagatttaaagtaccaaaataaacattacgtggaccatc 53523703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 44817740 - 44817801
Alignment:
Q  86 gtgagaatgacttctttatataagaatgtgagaatacaatatcaaccctttagattaaaatg 147  Q
    |||||||||||||| |||||| |||||||||||||||| ||| | || || |||||||||||    
T  44817740 gtgagaatgacttccttatatgagaatgtgagaatacattattagccattcagattaaaatg 44817801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 16897609 - 16897686
Alignment:
Q  86 gtgagaatgacttctttatataagaatgtgagaatacaatatcaaccctttagattaaaatgaaaggcttaaatttaa 163  Q
    ||||||||||||||  ||| | |||||||||||||||| |||   ||||| ||||||||||| | |||||| ||||||    
T  16897609 gtgagaatgacttccgtatgtgagaatgtgagaatacattatttgcccttcagattaaaatggagggcttagatttaa 16897686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 86 - 227
Target Start/End: Complemental strand, 13259753 - 13259612
Alignment:
Q  86 gtgagaatgacttctttatataagaatgtgagaatacaatatcaaccctttagattaaaatgaaaggcttaaatttaaagttccaaaataaacatcaggt 185  Q
    ||||||||||||| ||||| | ||||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13259753 gtgagaatgacttttttatgtgagaatgtaagaatacaatatcagccttttagattaaaatgaaaggcttagatttaaagttccaaaataaacatcaggt 13259654  T
Q  186 ggaccatcgcttcttcttttttcctccgcgttccaacacaac 227  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  13259653 ggaccatcgcttcttctttttttctccgggttccaacacaac 13259612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 86 - 238
Target Start/End: Complemental strand, 29117496 - 29117346
Alignment:
Q  86 gtgagaatgacttctttatataagaatgtgagaatacaatatcaaccctttagattaaaatgaaaggcttaaatttaaagttccaaaataaacatcaggt 185  Q
    |||||||||| |||||||| | ||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || ||||    
T  29117496 gtgagaatgatttctttatgtgagaatgtaagaatacaatatcagccctttagattaaaatgaaaggcttagatttaaagttccaaaataaatataaggt 29117397  T
Q  186 ggaccatcgcttcttcttttttcctccgcgttccaacacaactacctctacgt 238  Q
    ||||||||||||| |||||||| |||||||||||||||||||  |||||||||    
T  29117396 ggaccatcgcttc-tctttttt-ctccgcgttccaacacaacggcctctacgt 29117346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 86 - 217
Target Start/End: Original strand, 29116709 - 29116838
Alignment:
Q  86 gtgagaatgacttctttatataagaatgtgagaatacaatatcaaccctttagattaaaatgaaaggcttaaatttaaagttccaaaataaacatcaggt 185  Q
    |||||||||| |||||||| | ||||||| |||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  29116709 gtgagaatgatttctttatgtgagaatgtaagaatacaatatcagccctttagattaaaataaaaggcttagatttaaagttccaaaataaacatcaggt 29116808  T
Q  186 ggaccatcgcttcttcttttttcctccgcgtt 217  Q
    ||||||||||  |||||||| | |||||||||    
T  29116809 ggaccatcgc--cttcttttcttctccgcgtt 29116838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 13258964 - 13259071
Alignment:
Q  87 tgagaatgacttctttatataagaatgtgagaatacaatatcaaccctttagattaaaatgaaa-ggcttaaatttaaagttccaaaataaacatcaggt 185  Q
    |||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  13258964 tgagaatgacttctttatatgagaatgtgagaatacaatatcagtcctttagattaaaatgaaatggcttagatttaaagttccaaaataaacatcaggt 13259063  T
Q  186 ggaccatc 193  Q
    ||||||||    
T  13259064 ggaccatc 13259071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 26778866 - 26778973
Alignment:
Q  86 gtgagaatgacttctttatataagaatgtgagaatacaatatcaaccctttagattaaaatgaaaggcttaaatttaaagttccaaaataaacatcaggt 185  Q
    ||||||||||||| |||  || ||||||||||||| || ||||||||||||||||| |||||||||||||| |||||| || ||||||||||||| | ||    
T  26778866 gtgagaatgacttatttgcatgagaatgtgagaatgcattatcaaccctttagatttaaatgaaaggcttagatttaatgtaccaaaataaacattatgt 26778965  T
Q  186 ggaccatc 193  Q
    ||||||||    
T  26778966 ggaccatc 26778973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 27773239 - 27773345
Alignment:
Q  87 tgagaatgacttctttatataagaatgtgagaatacaatatcaaccctttagattaaaatgaaaggcttaaatttaaagttccaaaataaacatcaggtg 186  Q
    ||||||||||||  |||| | ||| |||||||||| | ||||| ||||| ||||||||||||| ||||||||||||| || |||| | ||||||||  ||    
T  27773239 tgagaatgactttcttatgtgagagtgtgagaatatattatcagcccttcagattaaaatgaagggcttaaatttaatgtaccaataaaaacatcacatg 27773338  T
Q  187 gaccatc 193  Q
    |||||||    
T  27773339 gaccatc 27773345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 28020104 - 28020255
Alignment:
Q  86 gtgagaatgacttctttatataagaatgtgagaatacaatatcaaccctttagattaaaatgaaaggcttaaatttaaagttccaaaataaacatcaggt 185  Q
    ||||||||||| ||||||| | ||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||| |||    
T  28020104 gtgagaatgacatctttatgtgagaatgtaagaatacaatatcagccctttagattaaaatgaaaggcttagatttaaaattccaaaataaacatctggt 28020203  T
Q  186 ggaccatcgcttcttc-ttttttcctccgcgttccaacacaactacctctac 236  Q
    |||||||||||||||| |||||| |||||| ||||||||||||  |||||||    
T  28020204 ggaccatcgcttcttcttttttttctccgcattccaacacaacggcctctac 28020255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 86 - 217
Target Start/End: Complemental strand, 28020884 - 28020755
Alignment:
Q  86 gtgagaatgacttctttatataagaatgtgagaatacaatatcaaccctttagattaaaatgaaaggcttaaatttaaagttccaaaataaacatcaggt 185  Q
    ||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||    
T  28020884 gtgagaatgacttctttatctgagaatgtgagaatacaatatcagccctttagattaaaatgaaaagctcagatttaaagttccaaaataaacatcaggt 28020785  T
Q  186 ggaccatcgcttcttcttttttcctccgcgtt 217  Q
    |||||||| |  |||||||| | |||||||||    
T  28020784 ggaccatcac--cttcttttcttctccgcgtt 28020755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 33045122 - 33045179
Alignment:
Q  114 tgagaatacaatatcaaccctttagattaaaatgaaaggcttaaatttaaagttccaa 171  Q
    ||||||| || ||||||||||||||||||||||||| |||||| ||||||| ||||||    
T  33045122 tgagaatccattatcaaccctttagattaaaatgaatggcttagatttaaacttccaa 33045179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 87 - 196
Target Start/End: Complemental strand, 43444565 - 43444456
Alignment:
Q  87 tgagaatgacttctttatataagaatgtgagaatacaatatcaaccctttagattaaaatgaaaggcttaaatttaaagttccaaaataaacatcaggtg 186  Q
    |||||||||||||||||| | |||||||||||||||| | |||||||||||||||||||||||||||||| |||||| || ||||||||||||| |  ||    
T  43444565 tgagaatgacttctttatttgagaatgtgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaataaacataacatg 43444466  T
Q  187 gaccatcgct 196  Q
    ||||||||||    
T  43444465 gaccatcgct 43444456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 17889514 - 17889605
Alignment:
Q  102 tatataagaatgtgagaatacaatatcaaccctttagattaaaatgaaaggcttaaatttaaagttccaaaataaacatcaggtggaccatc 193  Q
    ||||| ||||| |||||||||| ||||| ||||| ||||||||||| | |||||| |||||| || |||| | |||||||| ||||||||||    
T  17889514 tatatgagaatatgagaatacattatcagcccttcagattaaaatggagggcttagatttaatgtaccaataaaaacatcatgtggaccatc 17889605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 17888543 - 17888639
Alignment:
Q  86 gtgagaatgacttctttatataagaatgtgagaatacaatatcaaccctttagattaaaatgaaaggcttaaatttaaagttccaaaataaacatca 182  Q
    |||||||||||||| |||||| |||||||||||||||| ||| | || || ||||||||||| | | |||| |||||| || |||| | ||||||||    
T  17888543 gtgagaatgacttccttatatgagaatgtgagaatacattattagccattcagattaaaatggaggacttagatttaatgtaccaataaaaacatca 17888639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 17890472 - 17890404
Alignment:
Q  114 tgagaatacaatatcaaccctttagattaaaatgaaaggcttaaatttaaagttccaaaataaacatca 182  Q
    |||||||||| ||||||||||| ||||||||||| | |||||| |||||| || |||| | ||||||||    
T  17890472 tgagaatacattatcaacccttcagattaaaatggagggcttagatttaatgtaccaataaaaacatca 17890404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 48626876 - 48626817
Alignment:
Q  86 gtgagaatgacttctttatataagaatgtgagaatacaatatcaaccctttagattaaaat 146  Q
    ||||||||||||||||||| | |||||||||||||||| ||| || |||||| ||||||||    
T  48626876 gtgagaatgacttctttatgtgagaatgtgagaatacattat-aagcctttatattaaaat 48626817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 42933564 - 42933487
Alignment:
Q  86 gtgagaatgacttctttatataagaatgtgagaatacaatatcaaccctttagattaaaatgaaaggcttaaatttaa 163  Q
    |||||||||||||  ||||||||||||||||||||| | ||||| | ||||||||||||||||| |||||||||||||    
T  42933564 gtgagaatgactttattatataagaatgtgagaatatattatcagctctttagattaaaatgaagggcttaaatttaa 42933487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 3658 - 3581
Alignment:
Q  116 agaatacaatatcaaccctttagattaaaatgaaaggcttaaatttaaagttccaaaataaacatcaggtggaccatc 193  Q
    ||||| || ||||||||||||||||| |||||||||||||| |||||| || ||||||||||||| | ||||||||||    
T  3658 agaatgcattatcaaccctttagatttaaatgaaaggcttagatttaatgtaccaaaataaacattatgtggaccatc 3581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 526795 - 526891
Alignment:
Q  86 gtgagaatgacttctttatataagaatgtgagaatacaatatcaaccctttagattaaaatgaaaggcttaaatttaaagttccaaaataaacatca 182  Q
    |||||||||||||| |||||| |||||||||||||||| ||| | || || ||||||||||| | | |||| |||||| || |||| | ||||||||    
T  526795 gtgagaatgacttccttatatgagaatgtgagaatacattattagccattcagattaaaatggaggacttagatttaatgtaccaataaaaacatca 526891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 33181170 - 33181050
Alignment:
Q  86 gtgagaatgacttctttatataagaatgtgagaatacaatatcaaccctttagattaaaatgaaaggcttaaatttaaagttccaaaataaacatcaggt 185  Q
    |||||||||||||  |||| | |||||||||||||| | ||||| || |||| ||||||||||| |||||| |||||  || |||| | |||||||| ||    
T  33181170 gtgagaatgactttcttatttgagaatgtgagaatatattatcagccttttaaattaaaatgaagggcttagatttactgtaccaataaaaacatcacgt 33181071  T
Q  186 ggaccatc-gcttcttctttt 205  Q
    | ||||||  |||||||||||    
T  33181070 gcaccatcaccttcttctttt 33181050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University